Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0291 ATGTTTCGACCCTATTCATCACCTCCGATTTGTGGTTTTCTAGCTTACAAACACAATTTGTGTATCACTGCTATTCCCTCTACCTTCAGGAAGAGCAAGCGCATACAAAAACAATCGAAAGGCATCAACAAACTAAAAGTAGATCACTCCAAGAGGGAGAGAGAGAGAGAGAGCAGAATTTCAATCACTGTAGCATCTTATCACTTTCTTCACCGATTTCCCAACCCTTCTTCCGATTTGATTCCTGCCGCAGGTGTAGGGATTTTGCTTCCTGACGGACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTAGTACTGATGGTCAATTCTTAAGTTGGGCATATCGAATTACTTGGTGTATCAGGCGAGGATTAGAATGGCTGAGTAATCTAAGAGCTGGTCTAGCTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTATAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTGTGTGCATTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACCAGGATAAAATACGGACCTGCACGATACTGGGCCATTTTGTTTGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACACGCTGCTCATACGACGTAA 1542 42.93 MFRPYSSPPICGFLAYKHNLCITAIPSTFRKSKRIQKQSKGINKLKVDHSKRERERESRISITVASYHFLHRFPNPSSDLIPAAGVGILLPDGHYCAWGRTTTIYVHWAVSTDGQFLSWAYRITWCIRRGLEWLSNLRAGLAFLNLCCITDMMVKENLLQRVDDNAIENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKCDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8546801 8555387 + CcPI632755_04g002910.1 Cco04g0291 175516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0291 513 PANTHER ZINC FINGER, RING-CH-TYPE 179 502 - -
Cco04g0291 513 SMART ringv_2 278 319 IPR011016 GO:0008270(InterPro)
Cco04g0291 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 328 IPR013083 -
Cco04g0291 513 ProSiteProfiles Zinc finger RING-CH-type profile. 261 325 IPR011016 GO:0008270(InterPro)
Cco04g0291 513 Pfam RING-variant domain 284 318 IPR011016 GO:0008270(InterPro)
Cco04g0291 513 SUPERFAMILY RING/U-box 286 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0291 Cco-Chr4:8546801 Cco11g0657 Cco-Chr11:7169325 6.90E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0291 - - - 0.0