Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0347 ATGATACCAATGTCAGCGTCAAAATGGATGAGTTTAGTTATTATTGTGTTGTTTTTGGGAGTAAGTTTAAGATTTAGAGGTGTAAATGGGTTGAGTATGGGGTATTACTTGATGAGTTGTCCCTTTGTGGATCCCATTGTGAAGAACACTGTTAATAGAGCTCTTCAAAATGATCCCACTTTGGCTGCTTCTCTTGTTCGAATGCATTTTCATGATTGTTTCGTTGAGGGATGCGATGGTTCAATATTGATCGATTCGACACGAGACAACACAGCAGAAAAAGACTCTCCTGCTAACCTCAGTTTACGAGGTTACGAGGTTATTGATGAGATTAAGGAGCAACTCGAGAGCCAATGTCCCGGTGTTGTTTCTTGTGCTGACATTATTGCTATGGCTGCTAGAGATGCTGTCTTTTGGGCCGGGGGTCCGTTTTATGAGATACCGAAGGGAAGAAAGGACGGGAGCAGATCAAGAATCGAAGACACCGTCAATTTGCCTTCGCCTTTCTTAAATGCATCTCAGCTTATTAATACCTTTGCCCAACGCGGCTTCACTGCTCAGCAAATGGTCGCACTTTCTGGGGCGCATACATTGGGAGTGGCGAGATGCATATCGTTCAAAGGGAGATTGGACGGCAACGACCCTCTTTTGAGTCCAAACTTCGGAAGAGCACTATCAAGTACATGCAGCAATGGCGACAACGCAGTACAAACATTCGACGCCACACCCGACAGCTTTGACAACGTGTATTACAACGCGCTATCGAGAGGCGCTGGAGTCCTGTTTTCCGACCAGACATTGTTTGCTAACCCTCGTACGAGGGGCATTGTCACTGCCTACGCCATGAACCAAGCTTTATTCTTCATGGACTTTCAACAAGCCATCATCAAAATGGGCCTCCTCGATGTTAAAGAAGGTTATAGAGGCAAAGTTCGTCGCAACTGCCGTAGAGTTAATTGA 960 45.42 MIPMSASKWMSLVIIVLFLGVSLRFRGVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLVRMHFHDCFVEGCDGSILIDSTRDNTAEKDSPANLSLRGYEVIDEIKEQLESQCPGVVSCADIIAMAARDAVFWAGGPFYEIPKGRKDGSRSRIEDTVNLPSPFLNASQLINTFAQRGFTAQQMVALSGAHTLGVARCISFKGRLDGNDPLLSPNFGRALSSTCSNGDNAVQTFDATPDSFDNVYYNALSRGAGVLFSDQTLFANPRTRGIVTAYAMNQALFFMDFQQAIIKMGLLDVKEGYRGKVRRNCRRVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10025468 10030096 + CcPI632755_04g003470.1 Cco04g0347 175572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0347 319 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Cco04g0347 319 CDD secretory_peroxidase 30 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco04g0347 319 Gene3D Peroxidase, domain 2 166 298 - -
Cco04g0347 319 FunFam Peroxidase 166 298 - -
Cco04g0347 319 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 FunFam Peroxidase 34 171 - -
Cco04g0347 319 PANTHER PEROXIDASE 25-RELATED 21 315 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco04g0347 319 SUPERFAMILY Heme-dependent peroxidases 30 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 Gene3D - 34 319 - -
Cco04g0347 319 ProSiteProfiles Plant heme peroxidase family profile. 30 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g0347 319 Pfam Peroxidase 47 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0347 Cco-Chr4:10025468 Cco05g0930 Cco-Chr5:8135915 1.40E-76 dispersed
Cco01g1330 Cco-Chr1:21801755 Cco04g0347 Cco-Chr4:10025468 1.20E-62 transposed
Cco02g0911 Cco-Chr2:10993993 Cco04g0347 Cco-Chr4:10025468 5.20E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0347 K00430 - csv:101202852 607.06