Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0403 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGGGCTAACCCTTCCGAGATGGAGACGATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTGTCAAATCCCCCTGAAACCCTAGCTTGTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTGAACATGCATCCCTTCCTCCGCCGTACAATTCTTCACTCCCAACTCTGCCTTCTAATGACCTCATTGCTGCGATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGAGAAGGCAAAGAAACGCCAGGAGCTGCTTACCGGAAAGTCACGGTCCGACGAGAATGATCTTAGGAGAAAACAAGGAGACGATGTTTTGGAGTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCTGATAGGCCAGTCACTACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGCCGCTGTGTGATTCCTGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTTCTGGAGGACCTCAGAAGGCTTATCATTATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAGGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCACTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATGCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCGACAAGCATGAGACCAGTTGAAACAGAAGATTCTGCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATGAACGTCCAAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTTGGGAGGTGATGAATCTGCCAATTACTACCCCATGTGCCCATAACTTCTGCAAATCATGCTTGGAAGGTGCTTTTGCAGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGACGGATATATCAGATTTTCTACAGAATCTTCAGGTGAATAGAGATTTGTTGGATGTGATTCAGTCGTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGAATCTGAAAAGCTTTGTGAAGTGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCAGTCATTTGA 1926 44.96 MAQVSQLPCDGDGICMLCRANPSEMETITCKTCVTPWHVDCLSNPPETLACTLQWDCPDCSPPPEHASLPPPYNSSLPTLPSNDLIAAIRAIEADSSLTDGEKAKKRQELLTGKSRSDENDLRRKQGDDVLELFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVSGGPQKAYHYVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGMQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSMRPVETEDSASGKRSRRKIRQSHDMNVQERLLKEFSCLICWEVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMTCPCCPTDISDFLQNLQVNRDLLDVIQSLKGKLEEEGDESEKLCEVIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13170751 13181530 + CcPI632755_04g004030.1 Cco04g0403 175628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0403 641 MobiDBLite consensus disorder prediction 424 496 - -
Cco04g0403 641 MobiDBLite consensus disorder prediction 482 496 - -
Cco04g0403 641 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Cco04g0403 641 Gene3D - 239 435 IPR036987 -
Cco04g0403 641 SUPERFAMILY PUA domain-like 242 439 IPR015947 -
Cco04g0403 641 Coils Coil 596 616 - -
Cco04g0403 641 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Cco04g0403 641 Pfam SAD/SRA domain 270 419 IPR003105 -
Cco04g0403 641 MobiDBLite consensus disorder prediction 424 438 - -
Cco04g0403 641 MobiDBLite consensus disorder prediction 100 123 - -
Cco04g0403 641 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 239 434 - -
Cco04g0403 641 SMART G9a_1 263 420 IPR003105 -
Cco04g0403 641 MobiDBLite consensus disorder prediction 445 468 - -
Cco04g0403 641 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 618 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco04g0403 641 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 91 207 - -
Cco04g0403 641 Pfam Zinc finger, C3HC4 type (RING finger) 140 178 IPR018957 GO:0046872(InterPro)
Cco04g0403 641 CDD RING-HC_ORTHRUS_rpt1 136 183 IPR047498 -
Cco04g0403 641 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Cco04g0403 641 SMART ring_2 140 178 IPR001841 -
Cco04g0403 641 SMART ring_2 512 568 IPR001841 -
Cco04g0403 641 ProSiteProfiles Zinc finger RING-type profile. 140 179 IPR001841 -
Cco04g0403 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 207 IPR013083 -
Cco04g0403 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 599 IPR013083 -
Cco04g0403 641 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Cco04g0403 641 ProSiteProfiles Zinc finger RING-type profile. 512 568 IPR001841 -
Cco04g0403 641 Pfam RING-type zinc-finger 512 543 IPR027370 -
Cco04g0403 641 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cco04g0403 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Cco04g0403 641 SUPERFAMILY RING/U-box 131 186 - -
Cco04g0403 641 SUPERFAMILY RING/U-box 505 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0403 Cco-Chr4:13170751 Cco11g0084 Cco-Chr11:901587 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0403 K10638 - csv:101220457 1187.17