Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0403 | ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGGGCTAACCCTTCCGAGATGGAGACGATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTGTCAAATCCCCCTGAAACCCTAGCTTGTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTGAACATGCATCCCTTCCTCCGCCGTACAATTCTTCACTCCCAACTCTGCCTTCTAATGACCTCATTGCTGCGATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGAGAAGGCAAAGAAACGCCAGGAGCTGCTTACCGGAAAGTCACGGTCCGACGAGAATGATCTTAGGAGAAAACAAGGAGACGATGTTTTGGAGTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCTGATAGGCCAGTCACTACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGCCGCTGTGTGATTCCTGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTTCTGGAGGACCTCAGAAGGCTTATCATTATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAGGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCACTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATGCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCGACAAGCATGAGACCAGTTGAAACAGAAGATTCTGCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATGAACGTCCAAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTTGGGAGGTGATGAATCTGCCAATTACTACCCCATGTGCCCATAACTTCTGCAAATCATGCTTGGAAGGTGCTTTTGCAGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGACGGATATATCAGATTTTCTACAGAATCTTCAGGTGAATAGAGATTTGTTGGATGTGATTCAGTCGTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGAATCTGAAAAGCTTTGTGAAGTGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCAGTCATTTGA | 1926 | 44.96 | MAQVSQLPCDGDGICMLCRANPSEMETITCKTCVTPWHVDCLSNPPETLACTLQWDCPDCSPPPEHASLPPPYNSSLPTLPSNDLIAAIRAIEADSSLTDGEKAKKRQELLTGKSRSDENDLRRKQGDDVLELFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVSGGPQKAYHYVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGMQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSMRPVETEDSASGKRSRRKIRQSHDMNVQERLLKEFSCLICWEVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMTCPCCPTDISDFLQNLQVNRDLLDVIQSLKGKLEEEGDESEKLCEVIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13170751 | 13181530 | + | CcPI632755_04g004030.1 | Cco04g0403 | 175628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0403 | 641 | MobiDBLite | consensus disorder prediction | 424 | 496 | - | - | |
Cco04g0403 | 641 | MobiDBLite | consensus disorder prediction | 482 | 496 | - | - | |
Cco04g0403 | 641 | ProSiteProfiles | Zinc finger PHD-type profile. | 12 | 63 | IPR019787 | - | |
Cco04g0403 | 641 | Gene3D | - | 239 | 435 | IPR036987 | - | |
Cco04g0403 | 641 | SUPERFAMILY | PUA domain-like | 242 | 439 | IPR015947 | - | |
Cco04g0403 | 641 | Coils | Coil | 596 | 616 | - | - | |
Cco04g0403 | 641 | ProSitePatterns | Zinc finger RING-type signature. | 527 | 536 | IPR017907 | - | |
Cco04g0403 | 641 | Pfam | SAD/SRA domain | 270 | 419 | IPR003105 | - | |
Cco04g0403 | 641 | MobiDBLite | consensus disorder prediction | 424 | 438 | - | - | |
Cco04g0403 | 641 | MobiDBLite | consensus disorder prediction | 100 | 123 | - | - | |
Cco04g0403 | 641 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 239 | 434 | - | - | |
Cco04g0403 | 641 | SMART | G9a_1 | 263 | 420 | IPR003105 | - | |
Cco04g0403 | 641 | MobiDBLite | consensus disorder prediction | 445 | 468 | - | - | |
Cco04g0403 | 641 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 618 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Cco04g0403 | 641 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 91 | 207 | - | - | |
Cco04g0403 | 641 | Pfam | Zinc finger, C3HC4 type (RING finger) | 140 | 178 | IPR018957 | GO:0046872(InterPro) | |
Cco04g0403 | 641 | CDD | RING-HC_ORTHRUS_rpt1 | 136 | 183 | IPR047498 | - | |
Cco04g0403 | 641 | SUPERFAMILY | FYVE/PHD zinc finger | 7 | 66 | IPR011011 | - | |
Cco04g0403 | 641 | SMART | ring_2 | 140 | 178 | IPR001841 | - | |
Cco04g0403 | 641 | SMART | ring_2 | 512 | 568 | IPR001841 | - | |
Cco04g0403 | 641 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 179 | IPR001841 | - | |
Cco04g0403 | 641 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 207 | IPR013083 | - | |
Cco04g0403 | 641 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 474 | 599 | IPR013083 | - | |
Cco04g0403 | 641 | ProSiteProfiles | YDG domain profile. | 268 | 416 | IPR003105 | - | |
Cco04g0403 | 641 | ProSiteProfiles | Zinc finger RING-type profile. | 512 | 568 | IPR001841 | - | |
Cco04g0403 | 641 | Pfam | RING-type zinc-finger | 512 | 543 | IPR027370 | - | |
Cco04g0403 | 641 | ProSitePatterns | Zinc finger PHD-type signature. | 15 | 60 | IPR019786 | - | |
Cco04g0403 | 641 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 71 | IPR013083 | - | |
Cco04g0403 | 641 | SUPERFAMILY | RING/U-box | 131 | 186 | - | - | |
Cco04g0403 | 641 | SUPERFAMILY | RING/U-box | 505 | 593 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0403 | Cco-Chr4:13170751 | Cco11g0084 | Cco-Chr11:901587 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0403 | K10638 | - | csv:101220457 | 1187.17 |