Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0411 ATGGCAGAGGCGGCGGCAGCCGGTTTCTGGCGGAAGCTATTAACCGGACGGTGGTTGATGCTATTTGCATCACTAACAATCATGGCAATGAACGGATCAGGCTACATGTTCGGGCTCTACTCCGCCCGCATCAAATCCATTTTTGGTTACGATCAGTCGGCTCTTAATTTGATCAGCTTCTTCAAGGACTTGGGTGGCAATCTTGGGGTGGTTTCCGGCCTCCTCTACGAGGTGGCGCCACCGTGGGTGGTTCTCTCGGTCGGCGCCGTCCTCAACTTCTTCGCCTATTTCATGCTCTGGTTGGCAGTTTCCGGCCGGACCGCCGCACCGGGGCTGTGGCTGATGTGCGTTTATATGGGCGTTGCTGCTAACTCATTGTCTTTTGCTAATACCGCGGCTTTGGTTACTTGTGTTCGTAACTTTCCTCTTCATCGTGGCTGCCTTCTTGGCCTTCTTAAAGGGTACATAGGTTTAAGTGGTGCAATAATGACACAACTTTATCACGCCATGTATGGAGATGACCCAGAAGGCCTTATTTTGATGATTGCTTGGCTCCCATCCGCTGTCTCATTAGCTTCACTTCCACTAATTCGAGTGATGAACACCAATAACCACCAAGCCAATGACCTCAAACCATTCTACACCCTTCTTTACATGTCCCTTGCCCTTGCCACCTCTCTCATCGCCATTATCATCCCTCAAACTAAATTTCACTTCTCTAAAACCCACTATATTGCCGCCGCTTCTCCCGTCCTTCTCTTTCTCCTCCTCCCACTCGTCGTTGTTGTTAACCAAGAACTCGCCCTCTACAATCACCCACCTCCAACGTCGATACAAGTACAACCGTCGTCACTGCACCCGACGACGACGACGAGTCATTGGTACAAAAACATCTTCACCAGGCGGCCCTCGCTTGGAGACGACCACACCATCTTGCAAGCAATTTTAAGCATGGACATGGCAATTGTATTTGTCGCGACAACGTGCGGCGTCGGAGGAGCATTGACGGTGGTCGATAATGTCGCACAAATCGGCGCATCGTTAGACTATCCAGCTCATAGCATTTCGAGTTTCGTGTCACTAATGAGCATTTGGAACTTCCTAGGTCGTGTAGTGGCAGGGTATGTTTCTGAACTTCTTTTGATGAAGTATGGATTACCTCGACCGTTGATGCTCACTTTTGTAATACTAATGTCTTGCATTGGCCATATCTTGATTGCGTTTGGTGTCCCAAACTCTCTCTATTTTGCCTCCATCATCACTGGGTTTTGCTTGGGGGCACAATTGCCATTAACGGCCACGATCGTCTCTGATCTTTTTGGGTTGAAACACTATTCAACGTTGTACAACGTAGGATCTGTGTCAAGCCCTTTCGGATCCTACATTTTCAATGTTAGAGTGGCGGGTGGGGTTTATGATAGAGAAGGGGAAAAGCAAAGTAATGGGATCACAAAAGTGTGTAAAGGGGTGGGGTGTTATAGGCTTAGTTTTTCAATAATCATGGGGGCTTGTGTTTTTGGGAGTTTGGTTTCAATGGTTTTGGTTCGTAGGACAAGGAAGTTCTACAAAGATGACATTTATGCAAGGTTTACAAAAGGAGAAGAAATCACAACACCACACACTACTACAACTACTACAACAACTCCTTCTACTTCTTGTACTCTTTCCTTCACACAACAAGGATAA 1686 47.39 MAEAAAAGFWRKLLTGRWLMLFASLTIMAMNGSGYMFGLYSARIKSIFGYDQSALNLISFFKDLGGNLGVVSGLLYEVAPPWVVLSVGAVLNFFAYFMLWLAVSGRTAAPGLWLMCVYMGVAANSLSFANTAALVTCVRNFPLHRGCLLGLLKGYIGLSGAIMTQLYHAMYGDDPEGLILMIAWLPSAVSLASLPLIRVMNTNNHQANDLKPFYTLLYMSLALATSLIAIIIPQTKFHFSKTHYIAAASPVLLFLLLPLVVVVNQELALYNHPPPTSIQVQPSSLHPTTTTSHWYKNIFTRRPSLGDDHTILQAILSMDMAIVFVATTCGVGGALTVVDNVAQIGASLDYPAHSISSFVSLMSIWNFLGRVVAGYVSELLLMKYGLPRPLMLTFVILMSCIGHILIAFGVPNSLYFASIITGFCLGAQLPLTATIVSDLFGLKHYSTLYNVGSVSSPFGSYIFNVRVAGGVYDREGEKQSNGITKVCKGVGCYRLSFSIIMGACVFGSLVSMVLVRRTRKFYKDDIYARFTKGEEITTPHTTTTTTTTPSTSCTLSFTQQG 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13370629 13374903 + CcPI632755_04g004110.1 Cco04g0411 175636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0411 561 SUPERFAMILY MFS general substrate transporter 18 525 IPR036259 -
Cco04g0411 561 Gene3D MFS general substrate transporter like domains 316 523 IPR036259 -
Cco04g0411 561 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 16 527 - GO:0016020(PANTHER)
Cco04g0411 561 CDD MFS_Mch1p_like 16 507 - -
Cco04g0411 561 Pfam Nodulin-like 17 263 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0411 Cco-Chr4:13370629 Cco05g2391 Cco-Chr5:32391771 9.70E-158 dispersed
Cco04g0411 Cco-Chr4:13370629 Cco10g1983 Cco-Chr10:33350382 1.20E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0411 - - - 0.0