Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0464 | ATGGAGGTCGATACTAATTCTGGGAAACCGTCGAAACAGATTGGGGGTGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCAGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAGGCAGTGGAAGATGGTGATGGTAATGGAGTGGCAGGGGCTCAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAAGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTCTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCCGAAAGTGGGAGCCGGGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGTTCGGCTAGATTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTACCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGAGCTGATTTTGATGCCAGCACTGATGTCGTGATCGATGATTCTTTACTAAATGATGAAGCTCGCCAGCCTTTGTCAAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATCACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAGTGGCTCCCGGTCAATCGTGAGACATATCTTGATAGACTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGACAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCCATGTTAACATTTGAAGCCTTATCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCAAGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTAAAGGAACGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTATCAATGGACTTGTAGCTAAGGCTCAGAAAGTTCCAGATGAAGGGTGGGTCATGCAAGATGGTACGCCATGGCCTGGAAATAACACGAGAGATCATCCAGGAATGATACAGGTTTTCTTGGGGCACAGTGGAGGACTTGATACTGAGGGCAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAACGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCGGTGTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGCTATTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCGAAAAGAAAGGATTCTGATAAGAAGCAAACTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCGGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCACAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGCGGATATGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATCCCAGACCGTCCCGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTGGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACATCCATTCCACTTCTTGCCTATTGTACTTTACCTGCAATATGTCTGCTCACCGGAAAGTTTATTATTCCTCAGATCAGCAATCTTGCCAGCATCTGGTTCATATCGCTCTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATTGATACCAATTTCACGGTTACTTCGAAAGCATCTGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGCTATCAGTCTTGGGGACCCCTTTTCGGCAAACTGTTCTTTGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACCCCCACAATTGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATTGATCCCTTCACAACTCGGGTAACTGGTCCCGATGTGGAACAGTGTGGAATCAACTGCTAA | 3153 | 44.66 | MEVDTNSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC | 1050 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14594042 | 14599414 | - | CcPI632755_04g004640.1 | Cco04g0464 | 175689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0464 | 1050 | ProSiteProfiles | Zinc finger RING-type profile. | 20 | 66 | IPR001841 | - | |
Cco04g0464 | 1050 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 336 | 852 | IPR029044 | - | |
Cco04g0464 | 1050 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 93 | IPR013083 | - | |
Cco04g0464 | 1050 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 440 | 613 | IPR029044 | - | |
Cco04g0464 | 1050 | FunFam | Cellulose synthase | 439 | 613 | - | - | |
Cco04g0464 | 1050 | CDD | mRING-HC-C4C4_CesA | 18 | 68 | - | - | |
Cco04g0464 | 1050 | Pfam | Cellulose synthase | 322 | 1043 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cco04g0464 | 1050 | MobiDBLite | consensus disorder prediction | 623 | 655 | - | - | |
Cco04g0464 | 1050 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 230 | 1019 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cco04g0464 | 1050 | SUPERFAMILY | RING/U-box | 7 | 87 | - | - | |
Cco04g0464 | 1050 | Pfam | Zinc-binding RING-finger | 10 | 86 | IPR027934 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0464 | Cco-Chr4:14594042 | Cco09g0397 | Cco-Chr9:3610243 | 0.00E+00 | dispersed | |
Cco04g0464 | Cco-Chr4:14594042 | Cco10g1101 | Cco-Chr10:23307788 | 1.50E-244 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0464 | K10999 | - | csv:101211779 | 2118.58 |