Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0465 | ATGCCAATAATTCTGGTTTCCCGGTCGTCGGTGTTCTTCATTCTTCTTTTGAAGGTTGTAATGGCGGCCGCCACCGTCTCATTTTGGACAGTGAAGTATCTACCTGGATTCTCAGGTCCTCTTCCATTCCAACTTGAAACTGGATACGTGGGCGTGGGAGATTGGGAGGAAGTTCAATTGTTCTATTACTTCGTTAAGTCACAAGGAAATCCCCAAAAGGATCCTCTAATGACTTGGTACACCGGAGGCCCCGGGTGCTCCGCTTTTAATGGACTCTTCGAAGAAATTGGTCCTCTAAATTTCAAGTTAGAGTTATACAATGGAACCCTACCTCAACTAATCTTGAATCCTCATACATGGGTTAAGTGGTTCGAAGCTCATCCTGAATTTATATCTAATCCCTTTTATGTTGGTGGAAGCTCATATTCTGGTATGATTGTTCCACCAATTACTCAAGCAATCTCAGAAGCCCAAAATGTTAGGATTCCTTTTGCTTATAGCATGAATCTCATCTCTACTAAATTGTATAAGTCATTGTCAAGTAATTGCAAAGGAGAATATATGAAGATTGATCCAAATAATGTGGAGTGCTTGAAGTATATAGCAACCTTCAAAAAGTGTGTGGATAGAATCAATTATTGGTGTATTTTGCTTCCTTTTTGTGTGGCTCCAATCCGAAGAATTGAACGGCGGAGATCTCTCTACAACACGTCCGAACTTGCTCCAAAAGCATTACCGGCTAATACATCTCTTGACTGTCTTGAGTATAAACACAACCTCAATTATTATTGGGCTAACGATGACCGAGTTCAAAAAGCACTACATATACGTGAGGGAACTATTAAAGAATGGGTAAGATGCAATATTACTGATGATTATGAATATGACCTTATGAGTGTTGTTCCTTATCATGCAAACCTCAGTTTAAAAGGTTATCGGTCTTTGGTTTTTAGTGGGGATCATGATATGACGGTGGCGACCATAAGCACTCAAACGTGGATTGAATCTCTAAATTATTCCATTGTTGATGATTGGAGATCTTGGTTTTCTCTAGATGACCAAATACTCGGATACACAACAACATATGCAAATAGCATGACATTTGTGACCATTAAAGGTGGAGGACACACACCGGAATACATGCCACACCAATGCGACATAATGTTTAGCAGATGGATAAAAGGAGAAGCTTTATAA | 1197 | 39.68 | MPIILVSRSSVFFILLLKVVMAAATVSFWTVKYLPGFSGPLPFQLETGYVGVGDWEEVQLFYYFVKSQGNPQKDPLMTWYTGGPGCSAFNGLFEEIGPLNFKLELYNGTLPQLILNPHTWVKWFEAHPEFISNPFYVGGSSYSGMIVPPITQAISEAQNVRIPFAYSMNLISTKLYKSLSSNCKGEYMKIDPNNVECLKYIATFKKCVDRINYWCILLPFCVAPIRRIERRRSLYNTSELAPKALPANTSLDCLEYKHNLNYYWANDDRVQKALHIREGTIKEWVRCNITDDYEYDLMSVVPYHANLSLKGYRSLVFSGDHDMTVATISTQTWIESLNYSIVDDWRSWFSLDDQILGYTTTYANSMTFVTIKGGGHTPEYMPHQCDIMFSRWIKGEAL | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14641215 | 14654398 | - | CcPI632755_04g004650.1 | Cco04g0465 | 175690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0465 | 398 | SUPERFAMILY | alpha/beta-Hydrolases | 30 | 396 | IPR029058 | - | |
Cco04g0465 | 398 | Gene3D | alpha/beta hydrolase | 28 | 121 | IPR029058 | - | |
Cco04g0465 | 398 | Gene3D | alpha/beta hydrolase | 122 | 159 | IPR029058 | - | |
Cco04g0465 | 398 | Gene3D | alpha/beta hydrolase | 160 | 398 | IPR029058 | - | |
Cco04g0465 | 398 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 30 | 121 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Cco04g0465 | 398 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 366 | 379 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco04g0465 | 398 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 123 | 148 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco04g0465 | 398 | FunFam | Carboxypeptidase | 251 | 398 | - | - | |
Cco04g0465 | 398 | Pfam | Serine carboxypeptidase | 35 | 122 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Cco04g0465 | 398 | Pfam | Serine carboxypeptidase | 158 | 395 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0465 | Cco-Chr4:14641215 | Cco05g2931 | Cco-Chr5:36803452 | 4.80E-159 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0465 | K16296 | - | csv:101210918 | 436.032 |