Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g0525 | ATGGCGGATTACGATCTAACTCCCCGAATCGCGCCGAATCTGGACCGTCATCTTGTTTTCCCTCTCCTTGAGTTCCTTCAAGAGAGGCAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGACGATGTTCCTCAAGATATGGTGGACAGGAGGGCGGAAGTGGTGGCGAGGCTTAAGGCTTTGGAGGAGTCTGCAGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAACGATCGTTACCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTATTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATTGGCAGCTGAGGTTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATCATTGACTCTAAGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCACTGGAGCCTCTTCATCTTTTTCAACCACGACAATGGAAAAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCTACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCTATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGACGGGGCACAAAAGAAGATGAGAAAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGCAAGAGGCTTGAAGAAGGCAACCTTTCTACTGTCCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAATGTCCTTGCTGAGAAGTTGAACTTAAATTATGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTCGATGCAAAGATTGATTCCAAGACAGGAACAGTTATAATGGAACCAAACCAGCCCAATGTATATGAAGAACTGATAGACCACACAAAATCATTATCTGGGCGTACTTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGGCAACCAGATAA | 1314 | 42.47 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGKTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRKCEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMNVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 16925616 | 16929190 | + | CcPI632755_04g005250.1 | Cco04g0525 | 175750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g0525 | 437 | Pfam | PCI domain | 306 | 399 | IPR000717 | - | |
| Cco04g0525 | 437 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
| Cco04g0525 | 437 | SUPERFAMILY | TPR-like | 120 | 193 | IPR011990 | GO:0005515(InterPro) | |
| Cco04g0525 | 437 | Gene3D | - | 175 | 433 | - | - | |
| Cco04g0525 | 437 | ProSiteProfiles | PCI domain profile. | 219 | 403 | IPR000717 | - | |
| Cco04g0525 | 437 | SUPERFAMILY | Winged helix DNA-binding domain | 333 | 404 | IPR036390 | - | |
| Cco04g0525 | 437 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 332 | 416 | IPR000717 | - | |
| Cco04g0525 | 437 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 429 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cco04g0525 | 437 | PIRSF | Transl_init_eIF3e | 1 | 437 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cco04g0525 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 434 | IPR016650 | GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER) | |
| Cco04g0525 | 437 | CDD | eIF3E | 4 | 429 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cco04g0525 | 437 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
| Cco04g0525 | 437 | FunFam | Eukaryotic translation initiation factor 3 subunit E | 228 | 433 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g0525 | K03250 | - | csv:101205199 | 870.922 |