Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g0576 | ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTCCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACAGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCCGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTAGAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACCAACCAGAAAAAGTAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCAAGCACTAGAGCAACAACATCAACAACAACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATCAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCGCCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG | 795 | 43.14 | MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSRALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCDQPEKVVENEPDSGSQSQALEQQHQQQHEQEQLRPLSQQIPTSLQDQDQLQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 264 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18812233 | 18813697 | - | CcPI632755_04g005760.1 | Cco04g0576 | 175801 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g0576 | 264 | MobiDBLite | consensus disorder prediction | 159 | 192 | - | - | |
| Cco04g0576 | 264 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160(InterPro) | |
| Cco04g0576 | 264 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
| Cco04g0576 | 264 | MobiDBLite | consensus disorder prediction | 217 | 243 | - | - | |
| Cco04g0576 | 264 | Pfam | Response regulator receiver domain | 18 | 144 | IPR001789 | GO:0000160(InterPro) | |
| Cco04g0576 | 264 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 210 | IPR045279 | GO:0009736(InterPro) | |
| Cco04g0576 | 264 | Gene3D | - | 17 | 249 | - | - | |
| Cco04g0576 | 264 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160(InterPro) | |
| Cco04g0576 | 264 | MobiDBLite | consensus disorder prediction | 217 | 264 | - | - | |
| Cco04g0576 | 264 | MobiDBLite | consensus disorder prediction | 168 | 192 | - | - | |
| Cco04g0576 | 264 | SUPERFAMILY | CheY-like | 14 | 154 | IPR011006 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g0576 | Cco-Chr4:18812233 | Cco10g1598 | Cco-Chr10:29261022 | 5.60E-55 | dispersed | |
| Cco04g0576 | Cco-Chr4:18812233 | Cco06g1869 | Cco-Chr6:28929583 | 1.60E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59008 | PF00072 | Response_reg | 1.20E-18 | CL0304 | Cco | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g0576 | K14492 | - | csv:101220999 | 432.565 |