Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0619 ATGGCGGCGAATTTCTGGTCCTTGGCATGTATTCGGAGTCAGAACAGCAGCAATCTCTCTCCGCGCCCTCATTATCCCTCTATGCCGAAATACCCAGCTGGGGTTTTGCTGCCGGAGAACCGCATCCCGGTCATCGAGTCGACGGCCTTCTTCTCCGTCACCGGAATGACCTGCTCTGCATGTGCTGGCTCTGTGGAGAAGGCGATCAAACGCCTCCCTGGGATTCGTGAAGCTGTTGTTGGTGTTTTGAATGCCAAAGCTCGAGTCCAATTTTACCCTAGCTTCGTTAATGTGGATCAAATATGTGAGGCAATTAATGATGCAGGCTTTGAAGCAAGTCTAGTCAATGATGATATGATTGAAAGATGTCGAATTCGTGTGATTGGAATGACTTGCACTTCGTGTTCCACAACTTTGGAATCTACGTTACAAGCAATTGATGGAGTTCAAAATGCCCAAGTTGCATTAGCCACGGAAGAAGCAGAAATTTGTTACGATCCAAGGATTTTGAACTACAATCAACTTCTCCAAGCCATTGAAGATTCTGGATTTGAAGCTTTACTTATTAGCACAGACGAAGATGTGAGCAAGATACAGCTCCATGTTGATGGAGTGAGATCTGATAATTCAATGAGATTGATTGGGAGCTCTCTGGAAGCACTTCCTGGGGTTTTAGGTATTGATATTGACCCTGCACTCAGCAAACTTTCCTTGTCTTACAAGCCAAATGTCACGGGACCTCGGAATATAATCCAAGTGATTGAATCAACTGGATCGGGTCGATTTAGGGCAACAATATTTCCTGAAGGAGAGGGCAGAGAATCCTATAAAAAGGAGGAAATAAAGCAATATTACAGATCATTCTTCTGGAGTCTGATATTTACAATTCCAGTATTTCTAAGCTCCATGGTCTTCACTTATATACCTGGTATTAAGGATGGGCTAGATACCAAAATTGTCAATATGATGACTGTTGGAGAGCTGCTGAGGTGGGTGTTATCAACTCCTGTACAGTTCATTATTGGAAGGCGATTCTATACAGGGTCTTATAAAGCATTGCGTCATGGTTCTGCGAATATGGATGTTTTGATTGCTTTGGGGACAAATGCTGCATACTTTTATTCAGTCTACATGGTCTTAAGATCTGCAACCTCAAGTGGTTTTAAGGCCACAGACTTCTTTGAGACCAGTTCCATGCTTATTTCATTCATTCTCCTTGGCAAATATCTTGAGGTCTTGGCGAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCAACCTTGCTTACTTTTGATAATGATGGAAATATCATTAGGGAAGAAGAAATTGATAGTCGATTGATACAGAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAAGTTGCTTCAGATGGAATTGTTGTTTGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAAAGAAGGGATGATACGGTGATTGGAGGCACCTTGAACGAGAATGGGGTGCTACATGTAAGGGCAACGCACGTTGGATCTGAAAGTGCTCTTTCACAGATTGTGCGACTTGTTGAATCAGCTCAGATGGCCAAGGCTCCAGTTCAGAAAATTGCAGATCGCATCTCTAAGGTTTTTGTGCCAATGGTAATAGTCCTTTCATTGACAACATGGCTTGTCTGGTTTCTCACTGGGAAGTATGGTGGCTACCCAAGGACTTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCTCTCCAGTTTGGTATCTCAGTTATGGTCATAGCTTGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCTGTCATGGTTGGAACAGGAGTTGGGGCGTCAAAAGGTGTTTTAATCAAAGGCGGCCAAGCACTAGAGAGCGCTCACAAGGTGAATTGCATTGTGTTTGACAAGACTGGAACTCTTACAGTCGGGAAGCCAGTTGTGGTGAACACTAAGCTACTTAAAAATATGGCTCTGAAAGAATTCTGTGTGCTAGTCGCTGCCACTGAGGTAAACAGCGAGCATCCACTGGCTAAAGCCGTTGTCGAATATGCTCAAAAGTTCAAAGAAGAAGACAATAACCAAACTTGGCCTGAAGCACAAGACTTTATCTCCATTACTGGACATGGAGTTAAGGCCATCGTTCAAAACAAAGAAGTACTTGCAGGGAACAAGAGTCTTATGTTAGATCATAACATCTTCATACCTGTTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATTGATAGGAAATTGGCAGGCGTTCTTGCCATATCTGATCCACTAAAACCAAGTGCTCGCGATGTCATTTCCATACTCAAGGCCATGAAAGTTAAATCCATCATGGTGACAGGCGATAATTGGGGAACAGCAAAGTCCATAGCCAGTGAGGTTGGGATTGATGATGTAATTGCAGAAGCTAAACCTGACCAGAAAGCAGATGAAGTGAAGAAATTACAGGCTTTGGGTCATACTGTGGCAATGGTCGGAGACGGGATCAACGACTCACCGGCACTTGTGGCTGCAGATGTTGGAATGGCAATTGGTGCAGGCACAGACATTGCCATTGAGGCAGCTGACATAGTTCTCATGAAAAGCAACTTGGAGGATGTCATCACAGCCATCGACCTTTCGAGGAAAACGTTCTCCAGGATCCGTCTGAACTACATTTGGGCACTCAGTTACAATCTCCTTGGCATCCCTATAGCAGCAGGAGTCCTATTCCCATCAACTCGGTTTCGATTACCGCCATGGGTTGCAGGAGCAGCAATGGCAGCCTCTTCTGTTAGTGTTGTTTGCAGTTCTCTCCTGCTCAAGTATTACAAAAGACCCAAGAAGCTTGATAGCCTTGAGATACAAGGCATTAGAGTTGAGTGA 2946 44.09 MAANFWSLACIRSQNSSNLSPRPHYPSMPKYPAGVLLPENRIPVIESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVGVLNAKARVQFYPSFVNVDQICEAINDAGFEASLVNDDMIERCRIRVIGMTCTSCSTTLESTLQAIDGVQNAQVALATEEAEICYDPRILNYNQLLQAIEDSGFEALLISTDEDVSKIQLHVDGVRSDNSMRLIGSSLEALPGVLGIDIDPALSKLSLSYKPNVTGPRNIIQVIESTGSGRFRATIFPEGEGRESYKKEEIKQYYRSFFWSLIFTIPVFLSSMVFTYIPGIKDGLDTKIVNMMTVGELLRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSGFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETATLLTFDNDGNIIREEEIDSRLIQKNDVIKVIPGAKVASDGIVVWGQSHVNESMITGEAKPVAKRRDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKVFVPMVIVLSLTTWLVWFLTGKYGGYPRTWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLKNMALKEFCVLVAATEVNSEHPLAKAVVEYAQKFKEEDNNQTWPEAQDFISITGHGVKAIVQNKEVLAGNKSLMLDHNIFIPVEAEEILKEIEEMAQTGILVSIDRKLAGVLAISDPLKPSARDVISILKAMKVKSIMVTGDNWGTAKSIASEVGIDDVIAEAKPDQKADEVKKLQALGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALSYNLLGIPIAAGVLFPSTRFRLPPWVAGAAMAASSVSVVCSSLLLKYYKRPKKLDSLEIQGIRVE 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20187307 20192802 + CcPI632755_04g006190.1 Cco04g0619 175844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0619 981 FunFam Copper-transporting ATPase 1, putative 415 537 - -
Cco04g0619 981 Pfam E1-E2 ATPase 428 625 - -
Cco04g0619 981 SUPERFAMILY HMA, heavy metal-associated domain 48 117 IPR036163 GO:0046872(InterPro)
Cco04g0619 981 CDD P-type_ATPase_Cu-like 286 948 - -
Cco04g0619 981 FunFam ATPase copper transporting beta 119 193 - -
Cco04g0619 981 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 980 - -
Cco04g0619 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872(InterPro)
Cco04g0619 981 ProSiteProfiles Heavy-metal-associated domain profile. 196 262 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
Cco04g0619 981 CDD HMA 51 113 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 FunFam Copper-transporting ATPase HMA5 46 117 - -
Cco04g0619 981 SFLD Haloacid Dehalogenase 629 904 - -
Cco04g0619 981 Gene3D - 614 909 IPR023214 -
Cco04g0619 981 Pfam haloacid dehalogenase-like hydrolase 644 866 - -
Cco04g0619 981 FunFam Probable copper-transporting ATPase HMA5 752 909 - -
Cco04g0619 981 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 Gene3D - 415 537 - -
Cco04g0619 981 Gene3D - 733 783 IPR023299 GO:0000166(InterPro)
Cco04g0619 981 Gene3D - 654 732 IPR023299 GO:0000166(InterPro)
Cco04g0619 981 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Cco04g0619 981 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
Cco04g0619 981 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Cco04g0619 981 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Cco04g0619 981 SUPERFAMILY HMA, heavy metal-associated domain 192 259 IPR036163 GO:0046872(InterPro)
Cco04g0619 981 SFLD p-type atpase 629 904 IPR044492 -
Cco04g0619 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 392 923 IPR023298 -
Cco04g0619 981 Gene3D - 196 258 - -
Cco04g0619 981 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 NCBIfam heavy metal translocating P-type ATPase 360 961 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco04g0619 981 SUPERFAMILY HMA, heavy metal-associated domain 122 192 IPR036163 GO:0046872(InterPro)
Cco04g0619 981 SUPERFAMILY HAD-like 646 958 IPR036412 -
Cco04g0619 981 NCBIfam copper ion binding protein 51 112 IPR006122 GO:0005507(InterPro)
Cco04g0619 981 NCBIfam HAD-IC family P-type ATPase 400 933 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g0619 981 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872(InterPro)
Cco04g0619 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
Cco04g0619 981 Gene3D - 46 118 - -
Cco04g0619 981 Gene3D - 120 193 - -
Cco04g0619 981 CDD HMA 125 186 IPR006121 GO:0046872(InterPro)
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Cco04g0619 981 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0289 Cco-Chr1:2778041 Cco04g0619 Cco-Chr4:20187307 0.00E+00 dispersed
Cco02g1330 Cco-Chr2:25164598 Cco04g0619 Cco-Chr4:20187307 1.30E-244 dispersed
Cco04g0619 Cco-Chr4:20187307 Cco04g2350 Cco-Chr4:36957752 1.60E-240 dispersed
Cco04g0619 Cco-Chr4:20187307 Cco04g0620 Cco-Chr4:20207083 2.40E-10 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0619 K17686 - csv:101218801 1792.7