Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0671 ATGGACTTCTTACAGTCTCTGGATCCTCAAATTCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGGATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACTCTCTCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGTGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.74 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLDPEVFKEFKLVKRLQLSHNVAKFTFTLSNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21158968 21164714 + CcPI632755_04g006710.1 Cco04g0671 175896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cco04g0671 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cco04g0671 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cco04g0671 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cco04g0671 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cco04g0671 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cco04g0671 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cco04g0671 281 Gene3D Translation factors 40 139 - -
Cco04g0671 281 Gene3D - 140 281 IPR039261 -
Cco04g0671 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cco04g0671 281 CDD cyt_b5_reduct_like 50 281 - -
Cco04g0671 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2578 Cco-Chr2:38044606 Cco04g0671 Cco-Chr4:21158968 1.30E-118 dispersed
Cco04g0671 Cco-Chr4:21158968 Cco10g1651 Cco-Chr10:29930603 2.90E-134 dispersed
Cco04g0671 Cco-Chr4:21158968 Cco03g0942 Cco-Chr3:12089539 1.50E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0671 K00326 - csv:101212569 528.094