Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0671 ATGGACTTCTTACAGTCTCTGGATCCTCAAATTCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGGATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACTCTCTCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGACAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGTGGCGTCGGATTCGTATCGAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGGCCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.74 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLDPEVFKEFKLVKRLQLSHNVAKFTFTLSNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21158968 21164714 + CcPI632755_04g006710.1 Cco04g0671 175896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cco04g0671 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cco04g0671 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Cco04g0671 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cco04g0671 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cco04g0671 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cco04g0671 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Cco04g0671 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cco04g0671 281 Gene3D Translation factors 40 139 - -
Cco04g0671 281 Gene3D - 140 281 IPR039261 -
Cco04g0671 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cco04g0671 281 CDD cyt_b5_reduct_like 50 281 - -
Cco04g0671 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0671 K00326 - - csv:101212569 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2578 Cco-Chr2:38044606 Cco04g0671 Cco-Chr4:21158968 1.30E-118 dispersed
Cco04g0671 Cco-Chr4:21158968 Cco10g1651 Cco-Chr10:29930603 2.90E-134 dispersed
Cco04g0671 Cco-Chr4:21158968 Cco03g0942 Cco-Chr3:12089539 1.50E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86