Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0701 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAAGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCTCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCAGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTTGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACGGGGGATGATTGA 906 54.3 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21737176 21738081 - CcPI632755_04g007010.1 Cco04g0701 175926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0701 301 Gene3D - 94 156 - -
Cco04g0701 301 MobiDBLite consensus disorder prediction 1 91 - -
Cco04g0701 301 MobiDBLite consensus disorder prediction 1 18 - -
Cco04g0701 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cco04g0701 301 FunFam Two-component response regulator 93 156 - -
Cco04g0701 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cco04g0701 301 MobiDBLite consensus disorder prediction 46 60 - -
Cco04g0701 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cco04g0701 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0701 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0701 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2133 Cco-Chr2:34117137 Cco04g0701 Cco-Chr4:21737176 5.00E-28 dispersed
Cco04g0701 Cco-Chr4:21737176 Cco10g1632 Cco-Chr10:29685087 3.90E-105 dispersed
Cco04g0701 Cco-Chr4:21737176 Cco03g0134 Cco-Chr3:1297957 3.50E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59015 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cco TF