Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0701 ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAAGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCTCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCAGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTTGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACGGGGGATGATTGA 906 54.3 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21737176 21738081 - CcPI632755_04g007010.1 Cco04g0701 175926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0701 301 Gene3D - 94 156 - -
Cco04g0701 301 MobiDBLite consensus disorder prediction 1 91 - -
Cco04g0701 301 MobiDBLite consensus disorder prediction 1 18 - -
Cco04g0701 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cco04g0701 301 FunFam Two-component response regulator 93 156 - -
Cco04g0701 301 Pfam Myb-like DNA-binding domain 100 149 IPR001005 -
Cco04g0701 301 MobiDBLite consensus disorder prediction 46 60 - -
Cco04g0701 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677(InterPro)
Cco04g0701 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0701 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2133 Cco-Chr2:34117137 Cco04g0701 Cco-Chr4:21737176 5.00E-28 dispersed
Cco04g0701 Cco-Chr4:21737176 Cco10g1632 Cco-Chr10:29685087 3.90E-105 dispersed
Cco04g0701 Cco-Chr4:21737176 Cco03g0134 Cco-Chr3:1297957 3.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59015 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0701 - - - 0.0