Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0701 | ATGAGGGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAAGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCATCTCCGCCTCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCGCAGCCCAACTCAGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACCCTCAAGCGACCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGATTCGTCGATGCTGTTGCTCATTTAGGGATAAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGGTTGTCCTCCGGCGGCGGCGGCGGTGGTGGTGGCTTGGTTGCTTCCTCCGATCCCGCCACTGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATGGCCGCTGCTGCTGCTGTTGCCGTCCATCCGCAGCTCCAGCCGCCTTATCATCGGCAGGTCGGGCATTTCGGGTCACCGCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCACCAGTGCCTAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTCACCTTATTTCCTACGGGGGATGATTGA | 906 | 54.3 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAQPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVAVHPQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGAPVPNSVPNYIEDLESANASGGRKVLTLFPTGDD | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21737176 | 21738081 | - | CcPI632755_04g007010.1 | Cco04g0701 | 175926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0701 | 301 | Gene3D | - | 94 | 156 | - | - | |
Cco04g0701 | 301 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Cco04g0701 | 301 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cco04g0701 | 301 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Cco04g0701 | 301 | FunFam | Two-component response regulator | 93 | 156 | - | - | |
Cco04g0701 | 301 | Pfam | Myb-like DNA-binding domain | 100 | 149 | IPR001005 | - | |
Cco04g0701 | 301 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - | |
Cco04g0701 | 301 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677(InterPro) | |
Cco04g0701 | 301 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 5 | 256 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g0701 | 301 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2133 | Cco-Chr2:34117137 | Cco04g0701 | Cco-Chr4:21737176 | 5.00E-28 | dispersed | |
Cco04g0701 | Cco-Chr4:21737176 | Cco10g1632 | Cco-Chr10:29685087 | 3.90E-105 | dispersed | |
Cco04g0701 | Cco-Chr4:21737176 | Cco03g0134 | Cco-Chr3:1297957 | 3.50E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59015 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0701 | - | - | - | 0.0 |