Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0704 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGCGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCAAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTCATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTGCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCTTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCAGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTCGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTCAATGGTGGTGGTGTCCATTGA 1374 46.0 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21767290 21769539 - CcPI632755_04g007040.1 Cco04g0704 175929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0704 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Cco04g0704 457 SMART cyclin_7 233 317 IPR013763 -
Cco04g0704 457 SMART cyclin_7 330 414 IPR013763 -
Cco04g0704 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cco04g0704 457 Gene3D - 199 440 - -
Cco04g0704 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cco04g0704 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cco04g0704 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco04g0704 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cco04g0704 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco04g0704 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cco04g0704 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cco04g0704 457 Gene3D - 213 324 - -
Cco04g0704 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0704 K21777 - - csv:101217210 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2416 Cco-Chr2:36566029 Cco04g0704 Cco-Chr4:21767290 1.30E-111 dispersed
Cco04g0704 Cco-Chr4:21767290 Cco11g1919 Cco-Chr11:31872970 3.10E-69 dispersed
Cco04g0704 Cco-Chr4:21767290 Cco04g1862 Cco-Chr4:33292378 2.10E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g490 . Blo12g00623 . Bda03g00583 . . . . . . . . . . Sed14g0044 . . Bhi03g02515 Tan03g0519 Cmetu05g0055 . Hepe04g0519 . . Cla04g00589 Cam04g0578 Cec04g0653 Cco04g0704 Clacu04g0627 Cmu04g0623 Cre04g0641 Cone3ag0499 Cone10ag0468 . . . Csa04g01909 Chy08g00239 . . . . . Bpe04g00534 Bpe02g00023 . . . . Cmo07g01148 . . . . . Cpe19g00247 . . . . . . . . . . . . . . . . . Cme08g01425
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2431 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 4.6e-151 530.8
Cco04g0781 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.5e-96 347.1
Cco11g1957 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Cco04g0781 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cco11g1957 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.3e-118 420.2
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.3e-92 335.9
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT3G54180 54.2 5.0e-39 158.7
Cco04g0781 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.7e-123 438.3
Cco11g1957 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.9e-93 338.6
Cco11g1957 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cco04g0781 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.4e-118 420.2
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.4 2.1e-93 339.3
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT1G76540 70.7 3.5e-56 215.7
Cco11g1957 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Cco04g0781 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.5e-120 428.3
Cco05g2431 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 1.2e-96 350.1
Cco07g0778 . 1 142 Core Cell Cycle Gene Families AT1G20930 71.3 7.1e-57 218.0
Cco02g2568 . 49 563 Core Cell Cycle Gene Families AT5G10270 75.3 8.9e-219 756.5
Cco10g1398 . 24 485 Core Cell Cycle Gene Families AT5G10270 77.5 1.2e-210 729.6
Cco05g1100 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cco05g0679 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.9e-97 352.4
Cco08g0124 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 8.6e-97 351.3
Cco03g0396 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.9 3.3e-96 349.4
Cco11g0075 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Cco02g1754 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Cco02g1891 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.3 6.9e-94 341.7
Cco01g1793 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cco03g1703 . 840 1130 Core Cell Cycle Gene Families AT5G10270 52.8 4.6e-90 328.9
Cco02g2568 . 113 562 Core Cell Cycle Gene Families AT5G64960 72.9 8.2e-179 623.6
Cco10g1398 . 88 538 Core Cell Cycle Gene Families AT5G64960 71.7 6.1e-174 607.4
Cco05g1100 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cco11g0075 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cco03g0396 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.5 1.4e-80 297.4
Cco02g1891 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.2 2.3e-80 296.6
Cco05g0679 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cco08g0124 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 5.1e-80 295.4
Cco02g1890 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.5 4.3e-79 292.4
Cco03g1703 . 894 1130 Core Cell Cycle Gene Families AT5G64960 52.0 1.4e-72 270.8
Cco06g1643 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 4.9e-172 600.9
Cco06g1643 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.2e-155 545.4
Cco06g1643 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 5.2e-174 607.4
Cco04g0188 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.3 8.3e-203 703.4
Cco11g0257 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.6 1.3e-174 609.8
Cco08g0731 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 1.7e-144 509.6
Cco09g0233 . 225 488 Core Cell Cycle Gene Families AT1G44110 56.8 1.6e-86 317.0
Cco05g1952 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.8 1.2e-84 310.8
Cco05g2298 . 322 601 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cco08g1812 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.7e-78 290.4
Cco08g1451 . 321 582 Core Cell Cycle Gene Families AT1G44110 53.1 1.1e-74 277.7
Cco09g0233 . 224 488 Core Cell Cycle Gene Families AT1G77390 52.5 5.6e-76 282.0
Cco05g1952 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.8 2.1e-75 280.0
Cco05g2298 . 327 599 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cco08g1451 . 321 578 Core Cell Cycle Gene Families AT1G77390 50.4 4.8e-67 252.3
Cco05g1952 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.0 6.0e-118 421.4
Cco08g1451 . 200 594 Core Cell Cycle Gene Families AT5G25380 54.3 1.3e-101 367.1
Cco09g0233 . 223 490 Core Cell Cycle Gene Families AT5G25380 63.1 4.6e-94 342.0
Cco08g0731 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.4 1.5e-81 300.4
Cco05g2298 . 326 594 Core Cell Cycle Gene Families AT5G25380 51.7 6.3e-75 278.5
Cco02g0726 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.5 4.1e-58 222.6
Cco05g1952 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.0 4.3e-94 342.0
Cco08g1451 . 317 532 Core Cell Cycle Gene Families AT5G11300 69.9 2.5e-78 289.7
Cco08g0731 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cco05g2298 . 322 538 Core Cell Cycle Gene Families AT5G11300 55.3 7.4e-62 235.0
Cco08g1812 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cco02g0726 . 119 286 Core Cell Cycle Gene Families AT5G11300 51.5 1.4e-41 167.5
Cco09g0233 . 189 490 Core Cell Cycle Gene Families AT1G15570 64.2 2.5e-111 399.4
Cco08g0731 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.5e-81 299.3
Cco02g0726 . 119 348 Core Cell Cycle Gene Families AT1G15570 50.6 2.1e-57 220.3
Cco09g0233 . 4 495 Core Cell Cycle Gene Families AT1G80370 51.3 2.4e-114 409.5
Cco08g0731 . 217 483 Core Cell Cycle Gene Families AT1G80370 57.3 4.7e-81 298.9
Cco05g2298 . 322 599 Core Cell Cycle Gene Families AT1G80370 51.1 1.2e-76 284.3
Cco08g1812 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cco02g0726 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.3 1.8e-56 217.2
Cco08g1812 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 6.4e-115 411.0
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT5G43080 57.3 1.0e-112 403.7
Cco05g1952 . 208 477 Core Cell Cycle Gene Families AT5G43080 54.1 4.3e-79 292.0
Cco08g0731 . 218 492 Core Cell Cycle Gene Families AT5G43080 52.0 1.6e-78 290.0
Cco09g0233 . 226 488 Core Cell Cycle Gene Families AT5G43080 51.0 6.7e-72 268.1
Cco08g1812 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.1e-124 441.0
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT1G47210 54.5 2.8e-113 405.6
Cco05g1952 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.6e-76 283.5
Cco09g0233 . 226 486 Core Cell Cycle Gene Families AT1G47210 51.7 1.3e-73 273.9
Cco05g2298 . 322 603 Core Cell Cycle Gene Families AT1G47220 59.2 6.9e-95 344.4
Cco08g1812 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Cco05g1952 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 8.2e-72 267.7
Cco05g2298 . 228 602 Core Cell Cycle Gene Families AT1G47230 57.2 4.7e-116 414.8
Cco08g1812 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 6.7e-115 411.0
Cco02g0726 . 66 352 Core Cell Cycle Gene Families AT1G47230 53.6 7.3e-77 284.6
Cco08g0731 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 2.1e-76 283.1
Cco05g1952 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 3.2e-72 269.2
Cco09g0233 . 228 488 Core Cell Cycle Gene Families AT1G47230 51.9 1.0e-70 264.2
Cco04g0704 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.2e-116 414.1
Cco04g0704 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.8e-82 301.2
Cco02g2416 . 102 304 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cco04g1862 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 6.0e-46 181.8
Cco04g0704 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.9e-105 378.6
Cco04g1862 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 1.5e-61 233.8
Cco02g2416 . 14 411 Core Cell Cycle Gene Families AT2G26760 52.5 8.3e-108 387.5
Cco04g1862 . 8 425 Core Cell Cycle Gene Families AT2G17620 59.3 1.8e-119 426.4
Cco11g1919 . 208 607 Core Cell Cycle Gene Families AT2G17620 52.5 5.1e-106 381.7
Cco04g1866 . 1 131 Core Cell Cycle Gene Families AT2G17620 65.0 1.2e-41 167.9
Cco04g1862 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 4.7e-103 371.7
Cco11g1919 . 201 564 Core Cell Cycle Gene Families AT4G35620 53.4 5.9e-90 328.2
Cco02g2416 . 137 363 Core Cell Cycle Gene Families AT4G35620 50.9 2.3e-54 209.9
Cco04g1866 . 6 131 Core Cell Cycle Gene Families AT4G35620 64.5 2.5e-40 163.3
Cco11g1919 . 172 607 Core Cell Cycle Gene Families AT1G20610 63.1 5.7e-142 501.1
Cco04g1862 . 1 425 Core Cell Cycle Gene Families AT1G20610 56.7 5.4e-116 414.8
Cco04g1866 . 1 131 Core Cell Cycle Gene Families AT1G20610 64.3 3.0e-42 169.9
Cco11g1919 . 175 504 Core Cell Cycle Gene Families AT1G76310 63.5 5.4e-103 371.3
Cco04g1862 . 1 340 Core Cell Cycle Gene Families AT1G76310 53.2 3.1e-82 302.4
Cco02g2416 . 133 300 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Cco04g1866 . 5 131 Core Cell Cycle Gene Families AT1G76310 65.0 1.5e-39 160.6
Cco09g2265 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.2e-111 398.7
Cco05g2768 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Cco04g1608 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 5.1e-83 305.1
Cco05g1187 . 14 335 Core Cell Cycle Gene Families AT4G34160 51.1 9.3e-80 294.3
Cco08g1802 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.9 3.1e-67 252.7
Cco02g0687 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.6e-61 233.0
Cco04g1608 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cco08g1306 . 126 325 Core Cell Cycle Gene Families AT5G65420 55.0 5.9e-60 228.0
Cco04g1608 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.3e-56 214.2
Cco08g1306 . 121 299 Core Cell Cycle Gene Families AT5G10440 53.3 2.7e-50 195.7
Cco04g1409 . 80 334 Core Cell Cycle Gene Families AT5G27620 66.3 6.9e-94 340.9
Cco01g1535 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.3e-44 172.9
Cco02g2320 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.1e-42 169.1
Cco01g1535 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cco02g2320 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.0e-39 157.1
Cco05g2970 . 303 1321 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1414.8
Cco09g0583 . 2 484 Core Cell Cycle Gene Families AT1G02970 60.0 4.6e-159 558.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001137 2 4 2 5 2 1 1 2 1 3 2 1 5 2 2 3 1 3 3 2 2 2 1 2 2 1 2 11 4 3 77