Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0704 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGCGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCAAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTCATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTGCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCTTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCAGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTCGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTCAATGGTGGTGGTGTCCATTGA 1374 46.0 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21767290 21769539 - CcPI632755_04g007040.1 Cco04g0704 175929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0704 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Cco04g0704 457 SMART cyclin_7 233 317 IPR013763 -
Cco04g0704 457 SMART cyclin_7 330 414 IPR013763 -
Cco04g0704 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Cco04g0704 457 Gene3D - 199 440 - -
Cco04g0704 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Cco04g0704 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Cco04g0704 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco04g0704 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Cco04g0704 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco04g0704 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Cco04g0704 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Cco04g0704 457 Gene3D - 213 324 - -
Cco04g0704 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2416 Cco-Chr2:36566029 Cco04g0704 Cco-Chr4:21767290 1.30E-111 dispersed
Cco04g0704 Cco-Chr4:21767290 Cco11g1919 Cco-Chr11:31872970 3.10E-69 dispersed
Cco04g0704 Cco-Chr4:21767290 Cco04g1862 Cco-Chr4:33292378 2.10E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0704 K21777 - csv:101217210 754.592