Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0704 | ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGCGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCAAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAATAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCGACATCGGAGGTCATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTGCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCTTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCAGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTCGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCGTTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCTCAATGGTGGTGGTGTCCATTGA | 1374 | 46.0 | MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLALNGGGVH | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21767290 | 21769539 | - | CcPI632755_04g007040.1 | Cco04g0704 | 175929 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0704 | 457 | ProSitePatterns | Cyclins signature. | 228 | 259 | IPR048258 | - | |
Cco04g0704 | 457 | SMART | cyclin_7 | 233 | 317 | IPR013763 | - | |
Cco04g0704 | 457 | SMART | cyclin_7 | 330 | 414 | IPR013763 | - | |
Cco04g0704 | 457 | FunFam | G2/mitotic-specific cyclin-1 | 314 | 440 | - | - | |
Cco04g0704 | 457 | Gene3D | - | 199 | 440 | - | - | |
Cco04g0704 | 457 | SUPERFAMILY | Cyclin-like | 188 | 323 | IPR036915 | - | |
Cco04g0704 | 457 | Pfam | Cyclin, C-terminal domain | 326 | 444 | IPR004367 | - | |
Cco04g0704 | 457 | PANTHER | CYCLINS | 175 | 432 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco04g0704 | 457 | CDD | CYCLIN_AtCycB-like_rpt1 | 176 | 321 | - | - | |
Cco04g0704 | 457 | PIRSF | Cyclin_A_B_D_E | 1 | 454 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cco04g0704 | 457 | Pfam | Cyclin, N-terminal domain | 199 | 323 | IPR006671 | - | |
Cco04g0704 | 457 | SUPERFAMILY | Cyclin-like | 327 | 447 | IPR036915 | - | |
Cco04g0704 | 457 | Gene3D | - | 213 | 324 | - | - | |
Cco04g0704 | 457 | SMART | Cyclin_C_2 | 326 | 445 | IPR004367 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2416 | Cco-Chr2:36566029 | Cco04g0704 | Cco-Chr4:21767290 | 1.30E-111 | dispersed | |
Cco04g0704 | Cco-Chr4:21767290 | Cco11g1919 | Cco-Chr11:31872970 | 3.10E-69 | dispersed | |
Cco04g0704 | Cco-Chr4:21767290 | Cco04g1862 | Cco-Chr4:33292378 | 2.10E-65 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0704 | K21777 | - | csv:101217210 | 754.592 |