Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0763 ATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAAGATCTCGACCTCGAAGCTGGTTTAGAAATGCCATCGTCCGCTACCGGAGACAACGGTGACATGGGTCTTTTTCTCGAAGAAGCTGAGAAGGTGAAAATGGAGATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAGGAGACCAAATCTGCTCACAAACCCGAAACTCTCAAATCGCTTCGTAATACGATCAATGTCGACATCGTCACTGTCCTGAAAAAGGCGCGATCGATCCGATCTCAGCTTGAGGAAATGGACTGTGCCAATGCTGCAAAGAAACGTCTTTCTGGCAGCAAAGAAGGCACTGCCATTTACCGGACAAGAATTGCGGTGACAAACGGGCTGCGGAAGAAGCTAAAGGAATTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTCGGGCGAAGGTATTTCACGGTGACGGGGGAGCATCCGGAGGAGGAGGTGATAGAGAAGATAATATCCAATGGAGGAGAGGAATTTTTGGGGAGGGCGATAGAGGAGCACGGGCAGGGGAAAGTGGCAGAGACGGTGGTGGAGATACAAGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGTTTGCTAGAGCTACACCAAGTGTTTTTGGACATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACTGCAAAAGATTTGCAAAGGAACAGTAGGAAATGTATGTGTTTTGGGATTTTTCTTTTGCTTCTGATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGA 930 45.91 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEMPSSATGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSQLEEMDCANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGRAIEEHGQGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKCMCFGIFLLLLIILVVVIPIAVSFGSS 309
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 22778141 22779145 - CcPI632755_04g007630.1 Cco04g0763 175988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0763 309 CDD SNARE_syntaxin1-like 210 272 - -
Cco04g0763 309 PANTHER SYNTAXIN 48 294 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cco04g0763 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Cco04g0763 309 Pfam SNARE domain 248 299 IPR000727 -
Cco04g0763 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco04g0763 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco04g0763 309 Gene3D - 204 307 - -
Cco04g0763 309 FunFam Syntaxin 132 204 304 - -
Cco04g0763 309 SMART tSNARE_6 206 273 IPR000727 -
Cco04g0763 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020(InterPro)
Cco04g0763 309 CDD SynN 42 198 IPR006011 GO:0016020(InterPro)
Cco04g0763 309 Coils Coil 137 157 - -
Cco04g0763 309 Gene3D - 37 166 - -
Cco04g0763 309 SMART SynN_4 37 163 IPR006011 GO:0016020(InterPro)
Cco04g0763 309 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0763 Cco-Chr4:22778141 Cco10g1812 Cco-Chr10:31699964 1.30E-58 dispersed
Cco04g0763 Cco-Chr4:22778141 Cco04g1261 Cco-Chr4:27965463 5.70E-59 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0763 K08486 - csv:101220775 560.836