Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0764 ATGATTAATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTCCTCGGCAGCCGGTGTTTATGGCCTTACGCTTCACCCGCTTCTTATCGTTACTACTCTTGTCTTCGTCCTTGTTTTCGTTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGGTACTGCTGCTTTCTATGCTGCCGGCGTTGTTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATACAATACAAGCACATGCTTGGTGGACCTTCTTTAAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAGTTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTAGTCAGGGGTCCTTCCAGCCCACTTATTAAAACATTGTTGCTGGCAATGACCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGATGGGCATATATAAACAACAGGCATGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCCTTCATAGGAGCGATTTTGGCTGCTTGGCTTTTCAGAATTATCTTCCCACCACCACCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 732 48.36 MINAIKAAIGDAVLTSMWIFCASSLGVLTSVLSSAAGVYGLTLHPLLIVTTLVFVLVFVFNIIGAALGGASFNPTGTAAFYAAGVVPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFIISFAVLLIVVRGPSSPLIKTLLLAMTTVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPPPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22787659 22792072 + CcPI632755_04g007640.1 Cco04g0764 175989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0764 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0764 243 SUPERFAMILY Aquaporin-like 3 239 IPR023271 -
Cco04g0764 243 PANTHER AQUAPORIN SIP1-1 1 242 IPR044222 GO:0015250(InterPro)
Cco04g0764 243 FunFam Aquaporin SIP1-1 2 242 - -
Cco04g0764 243 Gene3D Glycerol uptake facilitator protein. 2 235 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0764 Cco-Chr4:22787659 Cco04g1099 Cco-Chr4:26416435 1.00E-10 dispersed
Cco04g0764 Cco-Chr4:22787659 Cco02g0445 Cco-Chr2:4016780 2.30E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0764 K09875 - csv:101220534 399.438