Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0773 ATGGCAGAATTAGATCAAGAAGTACTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATCGCCTCCGGCATAACCTACGACCGAGAAAACATCGAGAAATGGTTGTTTTCTGACAAACACAAGACATGCCCTGTCTCACAGGTCGTCTTGTCGGATTTTAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAATGCTTGTAGTGGTGTCGAGAGGATGCCAACACCCAAACCTCCGGTCGACCGGAAGCAAGTCGTTAGGATTCTCGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCAGCGAATGAAACTAATAAACGTTGCATGGAATCTGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAATTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATGAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGATAATCGTTGTCTGTTCAAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGCTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTTTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTCGTTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGACGCCGGAGCGAAAGCGAAAGGGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.55 MAELDQEVLDPPPFFLCPISLQIMKDPVTIASGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGVERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSTTNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADEVQILSLTADFFIEIVQILKDQISKQASKSALKLIIVVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVVQEMLRLGVVTKLCFLLQVVDAGAKAKGKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22890329 22892835 - CcPI632755_04g007730.1 Cco04g0773 175998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0773 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0773 424 Pfam U-box domain 12 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0773 424 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0773 424 SUPERFAMILY ARM repeat 103 388 IPR016024 -
Cco04g0773 424 Gene3D - 99 405 IPR011989 -
Cco04g0773 424 CDD RING-Ubox_PUB 12 63 IPR045210 -
Cco04g0773 424 SUPERFAMILY RING/U-box 3 84 - -
Cco04g0773 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Cco04g0773 424 PANTHER WDSAM1 PROTEIN 7 416 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2401 Cco-Chr2:36367435 Cco04g0773 Cco-Chr4:22890329 1.00E-92 dispersed
Cco04g0773 Cco-Chr4:22890329 Cco05g0313 Cco-Chr5:2485574 5.30E-55 dispersed
Cco04g0773 Cco-Chr4:22890329 Cco10g1817 Cco-Chr10:31793055 1.50E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0773 - - - 0.0