Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0775 ATGGGTTCATGTTACAACAATGGTGGGTCGGTTCTGTTTCTCCATTTCCGCCATGGATGCGACACTGAAGAACCTCCTGCTCTAACTAGAGAGAAGAATCCTCAATTTGCTGTCCCAATCTTCGTGCCGTTTTCTGTTTGGATCTTCAACACTCTTAAAAATCGCGTTAATGGTGCTGCTGCTACCCATTACTTCTTCCTCTTCTTCTTCCTTTATGAAGAGCAACATTCGCCGCCATTGCCAGACCTCTTCTTTTTTCCTTTACCTTTTACTTCCTTCTTTCCTTCAATGGCTGCTTACGCTTTGCTCGGCGATTCCACCCCCCGTGTTAATGGTGGTTTTGACGATAGTCCTTTGACCAGCGCTTCCACAAATAGCAACGGCAGTGACGAACATAATCATCAACAAATTGTTCAAGTTCAAGTTCAGGTTGCTCAACCGCGGTTGCCGGTTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATTGAAGGCGGCGGCGGCGGCGGTGGAGGAGGAGTTACTGCCGCTGTCCATCCTCGGTTTTGCCGGCGGAGTTTAGCTTCTGATCGTCCTTTTGCAGGTGGAGAAAATAAGGCGAATGCGAATGCGAATTATTGTTCTTCAAACCCTAGCCATGGCGGTGGTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGTATCTTCCACTACCTCCAACAATAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCCCAGCCTCACCATCACCATCTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGGTTGCCTTTGTTTCCACCGGAATTAAATCACCACCACAAGTTAAATACTCGCAATAATCCTTTTCCCCTTCCTAATCCATCTCAGGTTCTTCATAATCCTCCCACTACTGCAACTACCTCCATTATCGCCGCCGCTTCTTCCCCTATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGACTTAATCCATAGCTCCACCGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCTTGTAACCCCAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGGCGCTGAGGATCATCGCGTGAGGAAATCCCCCTTACCGTTGCCGCCGCCGGTGGCTGGGCTGGGGTTCCAGCAGAGGCAGTTCAACCAAGAGCAGCATGAGCAAGAACAGGATTGTTCTGGATTGAAGCTTAATCTCGATTCTTCTTCTCTGCATAATCTTCCTAATTTTGCCTCTCAACCGCCGTTTCATGAGCCGTATCTTCAATGGGGAACAACCCCTCCTCCGGTCCCCACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTCTCTTCCGTTACACCATCGTCGCTTGTTTCTCCAAACCATGCTCCTTCAAAGCCACAATCGGAACAGCAGAACTCTTGTCCGGTCAATGCAAAGGCAGCGGTGGCACACCCAGCTCCAGCGCCACCGCCGTCCACGAGCAATAACCCTTCAGCAACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCAGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTATCAACACCGTTCGGCACATCGGCGCAGAGGGTGGCAGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTGAGCTCTTGTTTAGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCTCATACACACAGCCAGAAAATAGCCTCAGCCTTCCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATACAAGAAGCTTTTGAAAGAGAAGAGAGAGTTCACATTATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGCTTGTTCCACATCTTGGCATCTAGACCCGGCGGACCGCCGTACGTTCGCCTTACGGGGCTGGGGACCTCTCAGGAGGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCCGAGAAGCTTGGCCTTCCCTTCGATTTCTTTCCTGTGGCTGATAAAATTGGCAATTTAGACTTGGAGAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTCCATTGGATGCAACATTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCTCCAAAAGTGGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGGTCTTTCTTGGGGAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCATTGGGTGTGAGCTACGGCGAAGAGAGTGAAGAAAGGCACTTAGTTGAGCAGCAACTATTATCAAGGGAGATCAGAAATGTCCTCGCAGTCGGAGGGCCATCGAGGAGCGGCGAATTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAAGGCATTTCCCTCGCCGGAAATGCTGCAACTCAAGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACACTTGTGGAAGACAATGGAACTCTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACAGCCTCGGCTTGGAAACCGCCGTTTCTTCATCATGCTGCGGCGGCTGCCACCAACAACCACATTCCCCGGTACTGA 2859 49.39 MGSCYNNGGSVLFLHFRHGCDTEEPPALTREKNPQFAVPIFVPFSVWIFNTLKNRVNGAAATHYFFLFFFLYEEQHSPPLPDLFFFPLPFTSFFPSMAAYALLGDSTPRVNGGFDDSPLTSASTNSNGSDEHNHQQIVQVQVQVAQPRLPVGKMVRKRIASEMEIEGGGGGGGGGVTAAVHPRFCRRSLASDRPFAGGENKANANANYCSSNPSHGGGNHSTVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPELNHHHKLNTRNNPFPLPNPSQVLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFGAEDHRVRKSPLPLPPPVAGLGFQQRQFNQEQHEQEQDCSGLKLNLDSSSLHNLPNFASQPPFHEPYLQWGTTPPPVPTPSAAAAGEDALQRLPGHHQLNLSSVTPSSLVSPNHAPSKPQSEQQNSCPVNAKAAVAHPAPAPPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGELKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFLHHAAAAATNNHIPRY 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22928426 22933270 - CcPI632755_04g007750.1 Cco04g0775 176000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0775 952 MobiDBLite consensus disorder prediction 397 418 - -
Cco04g0775 952 MobiDBLite consensus disorder prediction 496 548 - -
Cco04g0775 952 ProSiteProfiles GRAS family profile. 564 933 IPR005202 -
Cco04g0775 952 MobiDBLite consensus disorder prediction 496 527 - -
Cco04g0775 952 MobiDBLite consensus disorder prediction 236 272 - -
Cco04g0775 952 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 555 932 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Cco04g0775 952 MobiDBLite consensus disorder prediction 113 133 - -
Cco04g0775 952 MobiDBLite consensus disorder prediction 460 480 - -
Cco04g0775 952 Pfam GRAS domain family 574 933 IPR005202 -
Cco04g0775 952 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0775 Cco-Chr4:22928426 Cco07g1164 Cco-Chr7:25370241 1.20E-134 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59018 PF03514 GRAS 1.90E-126 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0775 K27742 - csv:101205286 1385.93