Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0781 ATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGCGAAGGAACTTACGGGAAGGTCTACAAGGCCAAAGACAAGGAGACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTTGAAATGGACGAAGAAGGCGTACCACCGACGGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAGTCTCTCTATGTCGTTCGTCTCCTCTGCGTTGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGTAAGGGCCCCAATCCTAGGCCTCTTCCTTCCACTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGCGTTGCGCATTGTCATAGTCATGGCGTTCTTCACCGTGATCTCAAACCGCAGAATCTACTTCTGGATCAAGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGTCTTGGACGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGTTCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCTTTGTTCCCCGGAGATTCTGAGTTCCAGCAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCCACCGAGAAACAGTGGCCTGGAGTTAGTTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCGAAAGCAGCTCTAGACCATCCCTATTTTGACAGCCTCGACAAGTCTCAGTATTAA 918 47.71 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23007610 23011312 + CcPI632755_04g007810.1 Cco04g0781 176006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0781 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0781 305 FunFam Cyclin-dependent kinase B2,2 1 91 - -
Cco04g0781 305 PANTHER CELL DIVISION PROTEIN KINASE 3 297 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cco04g0781 305 SMART serkin_6 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0781 305 FunFam Cyclin-dependent kinase 2 93 304 - -
Cco04g0781 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0781 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cco04g0781 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cco04g0781 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0781 305 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
Cco04g0781 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0781 Cco-Chr4:23007610 Cco11g1957 Cco-Chr11:32088666 3.00E-121 dispersed
Cco11g0624 Cco-Chr11:6755564 Cco04g0781 Cco-Chr4:23007610 4.90E-18 dispersed
Cco04g0781 Cco-Chr4:23007610 Cco08g1903 Cco-Chr8:30030380 2.10E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86728 PF00069 Pkinase 7.30E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0781 K07760 - csv:101204557 605.905