Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0788 ATGACAAGCAAAGACTTTGAACAACAGATGACGATGACGGCGAGTGATCTCAAAATGGCGAGCCTACGTAGTTTTGAACGACGGGTATCAGGGTCATCCCAAGATAAACTAGAAACTACCTTGGAACACCGCCAAGATCGGATTTTCTTATCTGGGTTGTTGCCATGTCGTGATTTTTCTTTATCTGAGGTTCTCCACGGAGTCTCGTTTGCGGAGAAGAATATTATGGCGATTAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCACATTGACGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCAATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAGTCTGTTTCAGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGCAAATGCTGATGGAGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGTTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACATCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAAGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCGTTTGGCGATGGATCAACAACTGCTACTCTGGAGGAAGCAAAAACTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAG 1728 45.83 MTSKDFEQQMTMTASDLKMASLRSFERRVSGSSQDKLETTLEHRQDRIFLSGLLPCRDFSLSEVLHGVSFAEKNIMAIRVRPFSRMEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSHIDESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINANADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTTATLEEAKTGARELGKGNSKSTCIHK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23149302 23160962 - CcPI632755_04g007880.1 Cco04g0788 176013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0788 575 SUPERFAMILY RING/U-box 490 538 - -
Cco04g0788 575 MobiDBLite consensus disorder prediction 85 104 - -
Cco04g0788 575 CDD RING-HC_RNFT1-like 493 533 - -
Cco04g0788 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 543 IPR013083 -
Cco04g0788 575 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 92 552 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Cco04g0788 575 ProSitePatterns Zinc finger RING-type signature. 510 519 IPR017907 -
Cco04g0788 575 SMART ring_2 495 532 IPR001841 -
Cco04g0788 575 MobiDBLite consensus disorder prediction 222 260 - -
Cco04g0788 575 Pfam Ring finger domain 494 533 IPR001841 -
Cco04g0788 575 ProSiteProfiles Zinc finger RING-type profile. 495 533 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0788 Cco-Chr4:23149302 Cco07g0562 Cco-Chr7:7350062 3.00E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0788 - - - 0.0