Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0794 ATGCCTTTTCTCTCTTTCTCGTCGCTTTCCCCTTCCATCATTTACCCCCTTCTTCAAATTCACTCTCTTTGTCTTCTTCTTCTTCTTTACCTTCCATTTTTCTTCTACCCCGTCTTCAAATTCACTCTCTTCTTCGTCTTCTTCTTATTTACAAACAGGGTTTCTGACGAACTCTTCAATTTCGACTTCATTCTGCTTCTTTCTCCCACAGGAGTTCGTCTGTTTGACTGTGATGAGCTAATTGCTAGATGCCGTCTATGTGGAGGGATTGTGTTTGCCTTTTTCTGCTGTTGTGTTGTCGCTCCATGCTTCTTGCTGGTGCTGCTACCACAGAGCCATCTGATGGTAAAGTTTTCTCGGCTGTATGCTTTTCATGAATTTGCTCCCATGTTCTCGGTTAAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTATGGACCAGCTTATCAGTTGGAATAAGGGAGATCCTTGCACAGATAACTGGATTGGAGTAGTATGCAGCTATTCTGATGGAGCTGTCAGGAACTTACGTGTCAAAGAACTCCAGCTATTGTACATGGACCTATCTGGAAAGTTAGCCCCTGAGATCAGCCAACTGTCCGTGCTTGAGAAGTTAAATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTTTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAACCGGTTCCAAGTAGATCAGAATCAAATTTCTGGGCCTATCCCAAAATCATATGCCAACTTGATCCGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCGCTGCCACCAGAATTTTCGACCTTGCCAATGCTACACATTCTGCAACTTGATAATAACAACTTCGAAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAAGTCTGAGGAATTGTGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCTTATAACCTCTCTTCTAGGATGACAACAATAATTTTGTCGAACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTATCCTCCAGAAACTGTCACTTGAGAATAATTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGACAATGTCCTTCGAATCTAGTGCTCGACTTACACTCGATCTTCGGAACAATTCGTTCTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTGAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGAGCGGACAAAACTCTGACCAGTTCTGTACGTCAAAAATGGTAGTGGATGGGCTTCATACAAGCTCAAGGAATTCCAGTAAAACATGTCCGGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACATGCATTTATTTGAAGTGTATCTGACAAAGGAACTCGGTTTGAATAAGCACCAACTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGCTTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAACTGAGATATTTCTCATTACAGAACAATTTATGTCATGGAATTTTACCCCAAATGACGTGTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCGAGACAGAGAAGATGGGCATTAGTACAGGCATCCTGGCAGCCATTATAGTTGGATCTGTTTTTTGTATTCTTTTGATCGTAGCAGTAACCGTACTTCTAGTCACTAGGCATTCTAGATACCATCAGGTTTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAAGAAGTGCAATTGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCAAGGTGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACAGAGATAAAACTCTTATCACGATTGCATCACCGAAACTTAGTATCCCTAATCGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGTACTTTGCGGGACTGGCTTTCTGGTTTTGAGTTTTCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGACTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCACACTGAAGCAAATCCTCCTATATTTCACCGAGATATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTTCGAGGGGGATGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTTTAACCCGTAAACTGACAGACAAAAGTGATGTCTATAGCTTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCATGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAAATGGGAACAGTTCTTTCAATTGTAGACACCAGTTTGGGTTCTTTCGCATCTGAGTGTTTAGAGAGGTTTGTCGCTTTGGCCCTCAGTTGTTGCCATGACCATCCAGAAGAACGGCCGTCGATGCTGGTTGTGGTGAGGGAGCTGGAGAACATACTAAACATGATGCCTGACGATAGCGGCACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCCAGGCTTCCATCCTCACCGGCATCAACGTCCTGCATCACCCGGGACCAGTTTGCATCAGGAAGCATTTCGGGGAGCGATCTCATCAGTGATGTCATGCCAACCATCAGACCTCGATGA 3180 42.42 MPFLSFSSLSPSIIYPLLQIHSLCLLLLLYLPFFFYPVFKFTLFFVFFLFTNRVSDELFNFDFILLLSPTGVRLFDCDELIARCRLCGGIVFAFFCCCVVAPCFLLVLLPQSHLMVKFSRLYAFHEFAPMFSVKALLAVKRSLIDPMDQLISWNKGDPCTDNWIGVVCSYSDGAVRNLRVKELQLLYMDLSGKLAPEISQLSVLEKLNFMWNNLTGSIPKEIGSILSLKLLLLNGNKLSGSLPDELGNLTNLNRFQVDQNQISGPIPKSYANLIRVKHLHFNNNTLSGEIPSELSKLPKLIHLLLDNNNLSGSLPPEFSTLPMLHILQLDNNNFEGEIPASYENFPKLVKLSLRNCGLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSSRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWETMSFESSARLTLDLRNNSFSDISGSTNPPANVTLRLGGNPICQNLSGQNSDQFCTSKMVVDGLHTSSRNSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMHLFEVYLTKELGLNKHQLLIDSYDWEGARLRMYLKLFPSFDSGTHKLDITEIFLITEQFMSWNFTPNDVFGPYELLNFTLPDRFQTVIFETEKMGISTGILAAIIVGSVFCILLIVAVTVLLVTRHSRYHQVLSRKNLSSTIGLKIDGVKAFSFKEVQLATGNFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFEFSDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTVLSIVDTSLGSFASECLERFVALALSCCHDHPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSARLPSSPASTSCITRDQFASGSISGSDLISDVMPTIRPR 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23232101 23244014 - CcPI632755_04g007940.1 Cco04g0794 176019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0794 1059 Gene3D Ribonuclease Inhibitor 389 513 IPR032675 -
Cco04g0794 1059 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0794 1059 CDD STKc_IRAK 727 1000 - -
Cco04g0794 1059 ProSiteProfiles Protein kinase domain profile. 721 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0794 1059 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
Cco04g0794 1059 Pfam Leucine Rich Repeat 370 387 IPR001611 GO:0005515(InterPro)
Cco04g0794 1059 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cco04g0794 1059 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Cco04g0794 1059 Pfam Leucine Rich Repeat 395 415 IPR001611 GO:0005515(InterPro)
Cco04g0794 1059 SUPERFAMILY Protein kinase-like (PK-like) 706 1025 IPR011009 -
Cco04g0794 1059 Pfam Leucine rich repeat N-terminal domain 133 169 IPR013210 -
Cco04g0794 1059 SUPERFAMILY L domain-like 133 433 - -
Cco04g0794 1059 PANTHER RECEPTOR-LIKE PROTEIN 55 150 998 - -
Cco04g0794 1059 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 245 338 - -
Cco04g0794 1059 FunFam Leucine-rich repeat receptor-like kinase 131 244 - -
Cco04g0794 1059 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 797 1012 - -
Cco04g0794 1059 Gene3D Transferase(Phosphotransferase) domain 1 797 1013 - -
Cco04g0794 1059 SMART serkin_6 721 1004 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0794 1059 Gene3D Ribonuclease Inhibitor 132 388 IPR032675 -
Cco04g0794 1059 ProSitePatterns Protein kinases ATP-binding region signature. 727 749 IPR017441 GO:0005524(InterPro)
Cco04g0794 1059 FunFam Leucine-rich repeat protein kinase family protein 685 796 - -
Cco04g0794 1059 Gene3D Phosphorylase Kinase; domain 1 692 796 - -
Cco04g0794 1059 Pfam Protein kinase domain 722 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0794 Cco-Chr4:23232101 Cco10g2277 Cco-Chr10:35617199 1.70E-94 dispersed
Cco04g0794 Cco-Chr4:23232101 Cco03g0003 Cco-Chr3:48484 9.70E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86729 PF00069 Pkinase 3.50E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0794 - - - 0.0