Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0803 ATGAGGCTACAATCCCTTTTTGCAGCATCATCTTTACTCTTACTCATATATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCGGCAAGCTCTTCTGGAGTTTATTTCAACAGTTCCCCATGGTCGGAAAATTAATTGGGATCCATCTACCCTGGTATGCACTACATGGATTGGCGTCACTTGCACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCAATCCCGGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATACCTTCTTCCCTGTCGCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCAGTGGAAACATTCCGAAATCAATACAAAATTTAACGCACCTCACTGGCCTCAACGTCCAAAACAACTCCCTGACCGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTTAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCGCCACTTAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCGTCTCCTGTTTCTTTGCCCCCACCAAAGAAAAAGAGCAAAAAGAAAATAAATATTGGAGCTATTGTTGCCATCGCCTTAGGTGGTGCTGCCGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGCGAAAAGATGGTGAAGGTAGTGCTGCTGCTGGGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAATAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCGTCTGCTGAAGTGCTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACGGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGTGGACGAGCTCCACCGGACTGGGAAACAAGATTGAAGGTTTCCTTGGGGTGTGCCAAAGGGCTTGCACATATCCATTCAGCAAGTGGGGGAAAATTCATCCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGATTTTGGCCTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGCGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTCTACAGTTTTGGAGTAGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCACCCAGCCGCGAAGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATGAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTGCCAGATATGAGACCAACGATGGAAGAAGTAGTTAGGATGATCGAGGAAATCCGACAATTAGACTCAGGAACGCGACCATCATCAGAAGATAACAAAGCTGGGGACGGGGACGATGACTTGAACACTCAGACCTTGGTTGAGACAAAGGTGGAGATGAATAATAAATTATTCAACACGATCTCAACTCCCTTCATCAACTACCAAATGTATAGAGTGGGCATATGGATTACAAATCTTCGTGCTATTTTCGACCTCACTTTATCTCCTTGCTACCTCTCATTTAACCTTAAAGGCGATTGGCAAAGTTCTTCGGTCTCTAAAATTGTCAAATTCCACAATAATTCAGAGGGTAAAGAGACCGACGAACAGGCAGCGATCATGGCTTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGCCCTGTAGCTGAAGATATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTCGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCCAAGGTACTGCTTTCCATATGCTCATTGCTGACTGATCCAAACCCAGATGACCCTCTTGTACCAGAGATCGCGCACATGTACAAGACCGACCGAACCAAATATGAAGCGAGTGCACGGAGCTGGACTCAGAAGTATGCGATGGGTTGA 2592 44.98 MRLQSLFAASSLLLLIYFLSFIAADLNSDRQALLEFISTVPHGRKINWDPSTLVCTTWIGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSFNSLSGNIPKSIQNLTHLTGLNVQNNSLTGSIPDIGHLKLKQLNLSYNHLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPVSLPPPKKKSKKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKRKDGEGSAAAGKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPSREDVMDLPRWVQSVVREEWTSEVFDVELMKYENIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRQLDSGTRPSSEDNKAGDGDDDLNTQTLVETKVEMNNKLFNTISTPFINYQMYRVGIWITNLRAIFDLTLSPCYLSFNLKGDWQSSSVSKIVKFHNNSEGKETDEQAAIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEASARSWTQKYAMG 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23360717 23367233 + CcPI632755_04g008030.1 Cco04g0803 176028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0803 863 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cco04g0803 863 FunFam Nuclear pore complex protein NUP107 26 181 - -
Cco04g0803 863 Pfam Protein kinase domain 339 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0803 863 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Cco04g0803 863 FunFam pollen receptor-like kinase 1 303 410 - -
Cco04g0803 863 Gene3D Ubiquitin Conjugating Enzyme 708 863 IPR016135 -
Cco04g0803 863 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 716 862 IPR000608 -
Cco04g0803 863 MobiDBLite consensus disorder prediction 610 626 - -
Cco04g0803 863 MobiDBLite consensus disorder prediction 286 310 - -
Cco04g0803 863 CDD UBCc 718 857 IPR000608 -
Cco04g0803 863 PANTHER OS05G0588300 PROTEIN 12 618 IPR050994 -
Cco04g0803 863 SMART ubc_7 719 862 - -
Cco04g0803 863 SUPERFAMILY UBC-like 702 862 IPR016135 -
Cco04g0803 863 CDD STKc_IRAK 341 606 - -
Cco04g0803 863 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Cco04g0803 863 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cco04g0803 863 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cco04g0803 863 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cco04g0803 863 Pfam Ubiquitin-conjugating enzyme 720 856 IPR000608 -
Cco04g0803 863 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524(InterPro)
Cco04g0803 863 MobiDBLite consensus disorder prediction 610 629 - -
Cco04g0803 863 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 789 804 IPR023313 -
Cco04g0803 863 FunFam Ubiquitin-conjugating enzyme 28, E2 716 863 - -
Cco04g0803 863 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Cco04g0803 863 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Cco04g0803 863 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 617 - -
Cco04g0803 863 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0803 863 SUPERFAMILY L domain-like 39 225 - -
Cco04g0803 863 Gene3D Phosphorylase Kinase; domain 1 304 410 - -
Cco04g0803 863 Gene3D Ribonuclease Inhibitor 185 228 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0455 Cco-Chr2:4106091 Cco04g0803 Cco-Chr4:23360717 4.30E-81 dispersed
Cco02g2028 Cco-Chr2:33248499 Cco04g0803 Cco-Chr4:23360717 2.70E-80 dispersed
Cco02g2029 Cco-Chr2:33256133 Cco04g0803 Cco-Chr4:23360717 1.10E-176 dispersed
Cco04g0662 Cco-Chr4:21039520 Cco04g0803 Cco-Chr4:23360717 3.20E-23 dispersed
Cco04g0803 Cco-Chr4:23360717 Cco11g0287 Cco-Chr11:2900088 1.10E-136 dispersed
Cco05g2720 Cco-Chr5:35109934 Cco04g0803 Cco-Chr4:23360717 6.00E-34 dispersed
Cco11g1430 Cco-Chr11:27072803 Cco04g0803 Cco-Chr4:23360717 6.60E-30 dispersed
Cco04g0803 Cco-Chr4:23360717 Cco01g0209 Cco-Chr1:1983287 8.90E-211 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86730 PF00069 Pkinase 9.40E-38 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0803 - - - 0.0