Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0807 | ATGAAGGAAATTCATAAATCCCGTCTTGCATTTGCATTTGCATCTATCTCTGTTTTCGTTTGCTTGTTCTTCGATGTCCATGTGGTTTTAGCAGACAATTACATCCCTCGGGATTTCATCCTCCTTGATTGTGGAGGGCCTTCAACTGCTAACGACATCGATGGCCGGAAATGGTATACCGATGACAAATCTAAGTTTGTTCCGGCGACAGGGAATAGCATCGTATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTCAGCTCTAATTTCACCTACAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTCTACTTTTATCCTTCTTCTTATGGTGGACTTAATGCATCTGATGCTCTTTTCTCTGTTTCCACTCCGTCCTATACTCTTCTTAAGAACTTCAGCGCTTCACAAACTGCTGAGGCTTTGAATTATGCCTATATCGTTAAGGAATACTCTATCCATGTCGATGGTGATAGGTTAAACTTGACTTTCATTCCATCCTCCAGTCGTCCAAAGGCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATGGCTGATATTTACAGTGATACTTCTGGGAGTACTCTGATTGTTGGCCCATCTACTCCATTCACTGTGGACAATGCCACTGCGCTTGAGAATGTTTATCGGTTGAATGTCGGGGGGAATGATATTTCACCTTCTGGTGATACGGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTATGGTGCAGCACAGGGAGTGACGATGAGTACTGATCAGAACACAACGCTTAATTATCCACCGAATATTCCTACTTATGTTGCGCCAGAAAATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATCTGAATTATAACTTGACATGGATTTTCCCTGTTGACACTGGGTTCTTTTATCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAGTTAACCAAAGAGTATTCGACATTTTCCTCTTTAATCAAACTGCTATGGAGGGTGCTGACGTGATTGCCTGGGCTGGAAGTAATGATACTCCTGTGTACAAAGATTATGTGGTTTTCGTTCCTGCTAATGGAAGTCCGCAGCAGGATTTATGGCTCGAACTCCATCCAGACAAGTCCATGGTCCCCAATTACTATGATGCAATCTTGAATGGTGTGGAGATATTCAAAATTAATGACTCGAGCGCTAATCTTGCTGGGCCAAATCCTATTCCTGCGCCAGTACAGAAAATTATTGATCCATCATTAGCTAAGCCAGCATCTTCTCACGGTAAATCAAAGAAGTCAGGGGTGATTGCTGGAGTTGTTTGTGGAGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCGTGGGCATGGGAAAGATTCAAGTACTGTTGAAGGACCGTCAGGATGGCTACCTCTTTCTCTCTATGGAAATTCCCATTCGGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCCAATCTTTGCCGCCACTTCTCGTTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTTGGTGGTTTTGGCAAAGTTTACAAGGGAGAAATTGATGGTGGGACTACAAAAGTTGCCATCAAGCGAGGGAACCCTCTTTCCGAGCAAGGTGTGCATGAATTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCATTGATTGGCTACTGTGAAGAGAATTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTGCGAGAACATCTATACAAGACTCACAAGCCACCGTTGTCTTGGAGGCAAAGGCTCGAGATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACGATTATTCATCGAGACGTGAAGACAACCAACATCCTTTTGGACGAAAAGTGGGTAGCAAAAGTATCCGATTTTGGGTTGTCGAAAACTGGTCCTACTTTGGATCACACACATGTTAGCACTGTTGTGAAAGGTAGTTTCGGATACTTGGATCCTGAATACTTTAGGCGACAGCAATTGACCGACAAATCAGATGTTTACTCCTTCGGAGTGGTTCTCTTTGAAGTCCTATGTGCTCGGCCAGCCTTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCCGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAGATCAGATAATCGACACATTCCTAAAGGGGAAGATCGCATCGGAGTGTCTCAAGAAGTTCGCCGAGACAGCAATGAAATGTGTGTCTGATCAGGGCATCGACAGGCCATCAATGGGCGACGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAGATAGGCAGTGGGATAGAAGTGGAAGGAGGTCAGCTCGACGTAGTTTACAAAGGGAAGAAGGATCCAGACGCTTCCCCTGGCATCGATGGAAACATAACCGACTCGAGAAGCACCGGAATCAGTATGAGCATTGGAAGCCGGAGTCTTGCCAGTGAAGATTCGGACGGGTTGACGCCAAGTGCCGTCTTCTCACAGATCATGAACCCAAAAGGTCGTTAA | 2694 | 44.91 | MKEIHKSRLAFAFASISVFVCLFFDVHVVLADNYIPRDFILLDCGGPSTANDIDGRKWYTDDKSKFVPATGNSIVSKAATQDPSVPDIPFMTARVFSSNFTYSFPVAPSRLFVRLYFYPSSYGGLNASDALFSVSTPSYTLLKNFSASQTAEALNYAYIVKEYSIHVDGDRLNLTFIPSSSRPKAYAFVNGIEIVSMADIYSDTSGSTLIVGPSTPFTVDNATALENVYRLNVGGNDISPSGDTGMYRSWFDDTPYLYGAAQGVTMSTDQNTTLNYPPNIPTYVAPENVYSTARAMGPDNNVNLNYNLTWIFPVDTGFFYLVRLHFCEVAANITKVNQRVFDIFLFNQTAMEGADVIAWAGSNDTPVYKDYVVFVPANGSPQQDLWLELHPDKSMVPNYYDAILNGVEIFKINDSSANLAGPNPIPAPVQKIIDPSLAKPASSHGKSKKSGVIAGVVCGAVVLALIIGFFVVAKRRRGHGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILDQIIDTFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKIGSGIEVEGGQLDVVYKGKKDPDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR | 897 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23394568 | 23397261 | - | CcPI632755_04g008070.1 | Cco04g0807 | 176032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0807 | 897 | ProSiteProfiles | Protein kinase domain profile. | 539 | 813 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0807 | 897 | MobiDBLite | consensus disorder prediction | 844 | 897 | - | - | |
Cco04g0807 | 897 | Pfam | Malectin-like domain | 42 | 412 | IPR024788 | - | |
Cco04g0807 | 897 | FunFam | FERONIA receptor-like kinase | 39 | 198 | - | - | |
Cco04g0807 | 897 | Pfam | Protein tyrosine and serine/threonine kinase | 545 | 807 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0807 | 897 | ProSitePatterns | Protein kinases ATP-binding region signature. | 545 | 568 | IPR017441 | GO:0005524(InterPro) | |
Cco04g0807 | 897 | Gene3D | Transferase(Phosphotransferase) domain 1 | 616 | 829 | - | - | |
Cco04g0807 | 897 | Gene3D | Phosphorylase Kinase; domain 1 | 524 | 615 | - | - | |
Cco04g0807 | 897 | SUPERFAMILY | Protein kinase-like (PK-like) | 512 | 812 | IPR011009 | - | |
Cco04g0807 | 897 | CDD | STKc_IRAK | 545 | 811 | - | - | |
Cco04g0807 | 897 | Gene3D | - | 224 | 413 | - | - | |
Cco04g0807 | 897 | Gene3D | - | 39 | 198 | - | - | |
Cco04g0807 | 897 | FunFam | FERONIA receptor-like kinase | 223 | 413 | - | - | |
Cco04g0807 | 897 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 660 | 672 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0807 | 897 | FunFam | Receptor-like protein kinase FERONIA | 616 | 826 | - | - | |
Cco04g0807 | 897 | MobiDBLite | consensus disorder prediction | 855 | 890 | - | - | |
Cco04g0807 | 897 | SMART | serkin_6 | 539 | 813 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0807 | 897 | PANTHER | OS03G0124300 PROTEIN-RELATED | 16 | 477 | IPR045272 | GO:0004714(InterPro)|GO:0006468(InterPro) | |
Cco04g0807 | 897 | FunFam | Receptor-like protein kinase FERONIA | 511 | 615 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0807 | Cco-Chr4:23394568 | Cco07g1672 | Cco-Chr7:30733302 | 7.90E-218 | dispersed | |
Cco11g0710 | Cco-Chr11:7846117 | Cco04g0807 | Cco-Chr4:23394568 | 2.20E-43 | dispersed | |
Cco02g1800 | Cco-Chr2:30842451 | Cco04g0807 | Cco-Chr4:23394568 | 6.10E-236 | transposed | |
Cco04g2309 | Cco-Chr4:36625562 | Cco04g0807 | Cco-Chr4:23394568 | 4.40E-170 | transposed | |
Cco10g2277 | Cco-Chr10:35617199 | Cco04g0807 | Cco-Chr4:23394568 | 2.20E-64 | wgd | |
Cco03g0003 | Cco-Chr3:48484 | Cco04g0807 | Cco-Chr4:23394568 | 1.70E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86731 | PF12819 | Malectin_like | 1.20E-40 | CL0202 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0807 | - | - | - | 0.0 |