Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0813 | ATGACATCTGGTCAGCCTTTGCTGGCTTCATCAGATTCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGGGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGGAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGAAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAGGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGCATACAGTTTGATGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCATCGTGTAGCATATCTTTATTTTCTTGCCATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGCAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGATTTCCGATTGAAAGTATGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCCGAGGGATGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGCCATAAATTTCCCCTCAGCCAATCAAACATAGTCTTGCGTGGTTGTCAGCTAAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTCATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACTAATGGGGCAGATGATGGTAAGAGGTACAGGTTTTATGGAATTCCTATGGAGACATTTTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATCATGATACCGATATCCCTTTATATTACGATGGAGATGGTGAGACTAGGCCAGTCGTATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCGTTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGCGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATTCATCGATGTTGTATTCCATCCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGGCCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTAATTATGCAAATGGTGAATTGCACGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTTGAGCGCACGTCGGGGCATATCGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCCGACAACACTATAAAGGTTCTGGTAAAAGGTGCCGATACTTCAATGTTTAGTATTTTAGGCATTGACTATGATAGGGAAGAATTTATCAAGCATACTACTCAGAGCCATTTGGGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGTTGTGGCAGACCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCATACAGCAGCCCTTATAGAATGCGACCTAAAGCTTTTGGGTGCAACCGCGATTGAGGACAAACTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGCAAAATATAGTATTAAATCAACACAGTGCGGAAGTCAAAGACCGAATCATAAGAATTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGTATGTCAGATTTTAACGAAGGGAAAGAAGACCTGACTGATAAACCACTAGCTCTAATAATTGACGGAAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGCTTTTTGACCTTGCAACTTCATGCGATGTTGTGCTATGTTGTCGTGTCGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGTGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAGGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTCTAAAAAGATTGCTACTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCGACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTTTACTCCAATATCCTAAGCTGTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTCCCATTATACATTTACAAGGAGAGTACCATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCGGTTGTTATCCTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCCGTCTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCGGTTTTTCCTAACTACTGGACAATCTTTCATCTTGCCAAGTCCCCAACGTACTGGCTAACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGTTATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCTGAGGTGCTGAGAAAACGAAAAGGATGCGAAATTCGTGTCCGAACTGGAGGAGGGATCTCGAGTCATAGGGTCTATGTTTTGTTGTTTTTGTTTGGAATGGAAGAGGAGGATGAAACTAATGCAGAATTCTCTGATACTGTATCATATGATATTAGGGTGATGAGGTAA | 3981 | 41.82 | MTSGQPLLASSDSPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQGDIVDVKENCTSPFGDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMELHNDDPASFELTRVQEKLHKAQRSRHKSIQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYSSMLYSIPATLGRRRWKLKSEVAVDTELVKLLHKGLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSNYANGELHEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMFSILGIDYDREEFIKHTTQSHLGEYSMEGLRTLVVAARDLKDSEFELWQTRYEDASTSLTERAVKLRHTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRQLLADAMAKYSIKSTQCGSQRPNHKNCENECHDLPKTSSMSDFNEGKEDLTDKPLALIIDGNSLVYILEKELESELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKGCEIRVRTGGGISSHRVYVLLFLFGMEEEDETNAEFSDTVSYDIRVMR | 1326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23446266 | 23452319 | + | CcPI632755_04g008130.1 | Cco04g0813 | 176038 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0813 | 1326 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 550 | 828 | IPR023299 | GO:0000166(InterPro) | |
Cco04g0813 | 1326 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 148 | 1271 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Cco04g0813 | 1326 | NCBIfam | HAD-IC family P-type ATPase | 477 | 568 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cco04g0813 | 1326 | NCBIfam | HAD-IC family P-type ATPase | 966 | 1081 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cco04g0813 | 1326 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 546 | 552 | IPR018303 | - | |
Cco04g0813 | 1326 | Pfam | Cation transport ATPase (P-type) | 661 | 736 | - | - | |
Cco04g0813 | 1326 | Pfam | haloacid dehalogenase-like hydrolase | 786 | 857 | - | - | |
Cco04g0813 | 1326 | Gene3D | - | 554 | 576 | IPR023299 | GO:0000166(InterPro) | |
Cco04g0813 | 1326 | Pfam | E1-E2 ATPase | 256 | 501 | - | - | |
Cco04g0813 | 1326 | CDD | P-type_ATPase_APLT_Dnf-like | 174 | 1155 | - | - | |
Cco04g0813 | 1326 | Gene3D | - | 812 | 1035 | IPR023214 | - | |
Cco04g0813 | 1326 | Pfam | Phospholipid-translocating ATPase N-terminal | 158 | 223 | IPR032631 | - | |
Cco04g0813 | 1326 | SFLD | p-type atpase | 528 | 1046 | IPR044492 | - | |
Cco04g0813 | 1326 | SUPERFAMILY | Calcium ATPase, transduction domain A | 255 | 397 | IPR008250 | - | |
Cco04g0813 | 1326 | Gene3D | - | 520 | 540 | - | - | |
Cco04g0813 | 1326 | FunFam | Phospholipid-transporting ATPase | 658 | 802 | - | - | |
Cco04g0813 | 1326 | Gene3D | - | 234 | 401 | - | - | |
Cco04g0813 | 1326 | Gene3D | - | 541 | 553 | IPR023214 | - | |
Cco04g0813 | 1326 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 1023 | 1263 | IPR032630 | - | |
Cco04g0813 | 1326 | NCBIfam | phospholipid-translocating P-type ATPase | 172 | 1270 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Cco04g0813 | 1326 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 172 | 1262 | IPR023298 | - | |
Cco04g0813 | 1326 | Gene3D | - | 658 | 795 | IPR023299 | GO:0000166(InterPro) | |
Cco04g0813 | 1326 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cco04g0813 | 1326 | SFLD | C1.7: P-type atpase like | 528 | 1046 | - | - | |
Cco04g0813 | 1326 | SUPERFAMILY | HAD-like | 539 | 1041 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0813 | Cco-Chr4:23446266 | Cco08g0989 | Cco-Chr8:21745021 | 0.00E+00 | dispersed | |
Cco04g0813 | Cco-Chr4:23446266 | Cco05g2749 | Cco-Chr5:35341328 | 1.80E-194 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0813 | K14802 | - | csv:101206692 | 2433.68 |