Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0813 ATGACATCTGGTCAGCCTTTGCTGGCTTCATCAGATTCTCCATCAGTTATTGAATACAGATCCCCATCTCGAAATCGTGGTTCCGTTGGTTGTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTACGACGATGCTCAGGGTGACATTGTGGATGTGAAGGAAAACTGCACCAGCCCTTTTGGAGATAACGGTTGGAGTAGTGAGAATTGCCTCAGACGGTCCACTTCGCTTTCTAGAAAGAGGCAGTTTTATACTGTTGGCTCTCTGTTTCCTCAGCAGTTTCCTTTTGGCTACCCCACCCAGGATAGAAGACGCCTGGTCTCGTGGGGTGCAATGGAGTTGCATAATGATGACCCTGCAAGCTTTGAACTTACTAGGGTCCAGGAGAAGTTGCATAAGGCGCAAAGAAGTCGTCATAAGAGCATACAGTTTGATGATAATTTACAACATGACGATAATCCAAGGTTGATATACATCAATGATCCAAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACCAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTCCATCGTGTAGCATATCTTTATTTTCTTGCCATTGCAGCTCTTAACCAGCTTCCACCTTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTTCCCCTTCTGTTTGTGCTCTGTGTTACAGCTATTAAAGATGGCTACGAAGATTGGCGTAGACACAGATCTGATCGCAATGAGAACAATAGACAGGCTCTGGTGTTTCAATCTGATGATTTCCGATTGAAAGTATGGAAAAAAATACGAGCAGGTGAAGTTGTAAAGATTTGTGCTGATGAGGTCATTCCTTGTGACATGGTTTTATTGGGGACAAGTGATCCCAGTGGCCTTGCTTACATCCAAACGATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCTGCAGTAGCCGAGGGATGTTCATATTCTGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGAGTTCAACGGCCATAAATTTCCCCTCAGCCAATCAAACATAGTCTTGCGTGGTTGTCAGCTAAAGAACACTGAATGGATTATTGGGGTGGTTGTCTATGCTGGACAAGAGACAAAAGCCATGCTAAACAGTGCAATGTCTCCTGCCAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACATTGTGGTTGTCAATTTTCCTCTTTATCATGTGTCTAGTTGTGGCCCTTGGAATGGGCTCATGGCTCGTTCGGCACAAGGAACGGCTTGATACCTTGCCATATTATAGGAAAAGGTATTTCACTAATGGGGCAGATGATGGTAAGAGGTACAGGTTTTATGGAATTCCTATGGAGACATTTTTCTCCTTTTTGAGTTCTATTATAGTGTTTCAGATCATGATACCGATATCCCTTTATATTACGATGGAGATGGTGAGACTAGGCCAGTCGTATTTCATGATTGAAGATAAGCACATGTACTGCAGAATCTCTTCCTCAAGGTTCCAGTGCAGATCGTTGAATATCAATGAGGATCTTGGTCAAGTTCGCTACGTATTTTCTGATAAAACAGGAACACTTACTGAAAATAAAATGGAATTTAAAAGAGCAAGCGTGCACGGGAAGAATTACGGGAACAACTTGTCTGAGGAATATTCATCGATGTTGTATTCCATCCCAGCAACTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGAAGTTGCTGTTGATACCGAACTTGTCAAATTATTGCACAAGGGCCTAAACGGAGATGAAAAGATTGCTGCACATGAATTTTTTCTTACATTGGCTGCATGCAATACTGTAATTCCTATTCACATGGATGACAAATCTAATTATGCAAATGGTGAATTGCACGAGGATTTTGAAACTATTGATTATCAGGGGGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCTCTGCTTATGGATATACCCTTTTTGAGCGCACGTCGGGGCATATCGTTATTGATGTCAATGGTGAGAACTTAAGGTTAGACGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAAAGAATGTCTGTCGTCATCAGATTCCCCGACAACACTATAAAGGTTCTGGTAAAAGGTGCCGATACTTCAATGTTTAGTATTTTAGGCATTGACTATGATAGGGAAGAATTTATCAAGCATACTACTCAGAGCCATTTGGGTGAATATTCAATGGAAGGTTTGCGAACACTTGTAGTTGCTGCCAGAGATCTGAAAGATTCTGAATTTGAGTTGTGGCAGACCAGATATGAGGATGCTAGTACTTCACTGACTGAAAGAGCAGTAAAACTACGTCATACAGCAGCCCTTATAGAATGCGACCTAAAGCTTTTGGGTGCAACCGCGATTGAGGACAAACTTCAAGATGGTGTACCTGAAGCCATTGAATCTCTTCGGCAGGCGGGAATAAAGGTTTGGATTCTGACTGGAGATAAGCAGGAGACAGCCATATCAATCGGTCTCTCCTGCAAACTGCTGACTTCTGATATGCAGTCAATAATTATCAATGGAAATTCCGAGAATGATTGCAGGCAACTTTTAGCTGATGCTATGGCAAAATATAGTATTAAATCAACACAGTGCGGAAGTCAAAGACCGAATCATAAGAATTGTGAGAATGAATGTCATGATTTACCAAAGACATCTAGTATGTCAGATTTTAACGAAGGGAAAGAAGACCTGACTGATAAACCACTAGCTCTAATAATTGACGGAAACAGTTTGGTGTATATTTTGGAGAAGGAATTGGAGTCTGAGCTTTTTGACCTTGCAACTTCATGCGATGTTGTGCTATGTTGTCGTGTCGCTCCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTGATGATATGACATTGGCAATTGGTGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGTGTTGGTATATGTGGACAGGAGGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGCTTTCTAAAAAGATTGCTACTAGTGCATGGACATTGGAACTATCAACGTGTAGGCTACATGGTTCTTTACAACTTCTACCGCAATGCTGTTTTCGTCTTGATGCTCTTCTGGTACATTCTATGCACGGCATTCTCGACAACTTCAGCTTTGACTGATTGGAGTAGTGTGTTTTACTCTGTTATTTATACTTCTATCCCTACTATTTTTGTTGGTATTCTGGACAAAGACTTGAGTGACAAAACTTTACTCCAATATCCTAAGCTGTATGGTGCTGGCCATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTCACAATGATTGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTCCCATTATACATTTACAAGGAGAGTACCATTGATATATGGAGCTTGGGAAGTTTGTGGACGATAGCGGTTGTTATCCTTGTGAACGTACACTTGGCGATGGATGTTCAACGTTGGGTATATATTACACATGCTGCCGTCTGGGGATCCATAGTCATAACATATGCCTGCATGGTGGTGTTGGATTCGATACCGGTTTTTCCTAACTACTGGACAATCTTTCATCTTGCCAAGTCCCCAACGTACTGGCTAACTATATTGCTCATAATAGTTGTAGCATTGCTTCCACGTTATCTTTTTAAAGTTGTGAATCAAAGATTTTGGCCCTCAGATATTCAGATAGCCAGAGAAGCTGAGGTGCTGAGAAAACGAAAAGGATGCGAAATTCGTGTCCGAACTGGAGGAGGGATCTCGAGTCATAGGGTCTATGTTTTGTTGTTTTTGTTTGGAATGGAAGAGGAGGATGAAACTAATGCAGAATTCTCTGATACTGTATCATATGATATTAGGGTGATGAGGTAA 3981 41.82 MTSGQPLLASSDSPSVIEYRSPSRNRGSVGCLCRSASFTSSSYDDAQGDIVDVKENCTSPFGDNGWSSENCLRRSTSLSRKRQFYTVGSLFPQQFPFGYPTQDRRRLVSWGAMELHNDDPASFELTRVQEKLHKAQRSRHKSIQFDDNLQHDDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRQALVFQSDDFRLKVWKKIRAGEVVKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVAEGCSYSGLIRCEQPNRNIYEFTANMEFNGHKFPLSQSNIVLRGCQLKNTEWIIGVVVYAGQETKAMLNSAMSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGSWLVRHKERLDTLPYYRKRYFTNGADDGKRYRFYGIPMETFFSFLSSIIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRISSSRFQCRSLNINEDLGQVRYVFSDKTGTLTENKMEFKRASVHGKNYGNNLSEEYSSMLYSIPATLGRRRWKLKSEVAVDTELVKLLHKGLNGDEKIAAHEFFLTLAACNTVIPIHMDDKSNYANGELHEDFETIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADTSMFSILGIDYDREEFIKHTTQSHLGEYSMEGLRTLVVAARDLKDSEFELWQTRYEDASTSLTERAVKLRHTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRQLLADAMAKYSIKSTQCGSQRPNHKNCENECHDLPKTSSMSDFNEGKEDLTDKPLALIIDGNSLVYILEKELESELFDLATSCDVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSIPTIFVGILDKDLSDKTLLQYPKLYGAGHRQEAYNLRLFWFTMIDTLWQSLVLFYVPLYIYKESTIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIVITYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVNQRFWPSDIQIAREAEVLRKRKGCEIRVRTGGGISSHRVYVLLFLFGMEEEDETNAEFSDTVSYDIRVMR 1326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23446266 23452319 + CcPI632755_04g008130.1 Cco04g0813 176038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0813 1326 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 550 828 IPR023299 GO:0000166(InterPro)
Cco04g0813 1326 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 1271 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cco04g0813 1326 NCBIfam HAD-IC family P-type ATPase 477 568 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g0813 1326 NCBIfam HAD-IC family P-type ATPase 966 1081 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco04g0813 1326 ProSitePatterns E1-E2 ATPases phosphorylation site. 546 552 IPR018303 -
Cco04g0813 1326 Pfam Cation transport ATPase (P-type) 661 736 - -
Cco04g0813 1326 Pfam haloacid dehalogenase-like hydrolase 786 857 - -
Cco04g0813 1326 Gene3D - 554 576 IPR023299 GO:0000166(InterPro)
Cco04g0813 1326 Pfam E1-E2 ATPase 256 501 - -
Cco04g0813 1326 CDD P-type_ATPase_APLT_Dnf-like 174 1155 - -
Cco04g0813 1326 Gene3D - 812 1035 IPR023214 -
Cco04g0813 1326 Pfam Phospholipid-translocating ATPase N-terminal 158 223 IPR032631 -
Cco04g0813 1326 SFLD p-type atpase 528 1046 IPR044492 -
Cco04g0813 1326 SUPERFAMILY Calcium ATPase, transduction domain A 255 397 IPR008250 -
Cco04g0813 1326 Gene3D - 520 540 - -
Cco04g0813 1326 FunFam Phospholipid-transporting ATPase 658 802 - -
Cco04g0813 1326 Gene3D - 234 401 - -
Cco04g0813 1326 Gene3D - 541 553 IPR023214 -
Cco04g0813 1326 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
Cco04g0813 1326 NCBIfam phospholipid-translocating P-type ATPase 172 1270 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cco04g0813 1326 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 1262 IPR023298 -
Cco04g0813 1326 Gene3D - 658 795 IPR023299 GO:0000166(InterPro)
Cco04g0813 1326 MobiDBLite consensus disorder prediction 1 28 - -
Cco04g0813 1326 SFLD C1.7: P-type atpase like 528 1046 - -
Cco04g0813 1326 SUPERFAMILY HAD-like 539 1041 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0813 Cco-Chr4:23446266 Cco08g0989 Cco-Chr8:21745021 0.00E+00 dispersed
Cco04g0813 Cco-Chr4:23446266 Cco05g2749 Cco-Chr5:35341328 1.80E-194 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0813 K14802 - csv:101206692 2433.68