Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0819 | ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTCGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACGTTCAATTTCATCACTGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCTTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCTGTCATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGACCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCATCATAGGTACACCAGAATTCATGGCGCCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAATCCTGCTCAGATATACAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCGCCTAATTCCAACAATAATGAAGACTTACTGTCTTCATCTCTATCTCCACAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGATGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCGACGGAGATGGTTAAAGAGGTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTTTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGAACAAGACCACAACGACAACGACAACGACAACGATGATGATGATAACGAAAACCATGAATTACCACATCCTTTCTATTATTGTTGCTCCTCTCTTGCCTCCTCCTCAAATTCTCTTCGGGGTTTCTACTCTTTAAAAGAGAGCCTCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTAGCACTGAATGGTTCCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGACTCAATACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTCGAGAGTCGATCTCGATCAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACATTGCATCGGTCTTTAGTAGAGATGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG | 1797 | 40.12 | MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNEDLLSSSLSPQKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIALMIKKEISTLIPDWEEWKLPKNHHQDSFTYEQDHNDNDNDNDDDDNENHELPHPFYYCCSSLASSSNSLRGFYSLKESLNHHFGGMKETSTSTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSETQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRSNNSHKLMRVKSMVNLRSETLHRSLVEMLKKRLFNTVGAMENIGYQKP | 598 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23539503 | 23546024 | + | CcPI632755_04g008190.1 | Cco04g0819 | 176044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0819 | 598 | Gene3D | - | 310 | 382 | - | - | |
Cco04g0819 | 598 | Gene3D | Transferase(Phosphotransferase) domain 1 | 100 | 282 | - | - | |
Cco04g0819 | 598 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0819 | 598 | SMART | serkin_6 | 17 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0819 | 598 | CDD | STKc_WNK | 15 | 275 | - | - | |
Cco04g0819 | 598 | FunFam | Probable serine/threonine-protein kinase WNK1 | 2 | 98 | - | - | |
Cco04g0819 | 598 | FunFam | probable serine/threonine-protein kinase WNK9 | 100 | 281 | - | - | |
Cco04g0819 | 598 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 424 | IPR011009 | - | |
Cco04g0819 | 598 | Gene3D | Phosphorylase Kinase; domain 1 | 3 | 98 | - | - | |
Cco04g0819 | 598 | Pfam | Protein kinase domain | 21 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0819 | 598 | ProSiteProfiles | Protein kinase domain profile. | 17 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0819 | 598 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 5 | 592 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cco04g0819 | 598 | MobiDBLite | consensus disorder prediction | 392 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2037 | Cco-Chr2:33377409 | Cco04g0819 | Cco-Chr4:23539503 | 1.40E-163 | dispersed | |
Cco04g0819 | Cco-Chr4:23539503 | Cco06g1045 | Cco-Chr6:14725954 | 5.20E-117 | dispersed | |
Cco04g0819 | Cco-Chr4:23539503 | Cco06g0628 | Cco-Chr6:6951084 | 5.00E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86734 | PF00069 | Pkinase | 1.70E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0819 | K08867 | - | csv:101207665 | 979.163 |