Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0819 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTCGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACGTTCAATTTCATCACTGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCTTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCTGTCATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGACCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCATCATAGGTACACCAGAATTCATGGCGCCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAATCCTGCTCAGATATACAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCGCCTAATTCCAACAATAATGAAGACTTACTGTCTTCATCTCTATCTCCACAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGATGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCGACGGAGATGGTTAAAGAGGTGGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTTTGATGATAAAGAAGGAGATATCCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGAACAAGACCACAACGACAACGACAACGACAACGATGATGATGATAACGAAAACCATGAATTACCACATCCTTTCTATTATTGTTGCTCCTCTCTTGCCTCCTCCTCAAATTCTCTTCGGGGTTTCTACTCTTTAAAAGAGAGCCTCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTAGCACTGAATGGTTCCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGACTCAATACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTCGAGAGTCGATCTCGATCAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACATTGCATCGGTCTTTAGTAGAGATGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG 1797 40.12 MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSIIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNEDLLSSSLSPQKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIALMIKKEISTLIPDWEEWKLPKNHHQDSFTYEQDHNDNDNDNDDDDNENHELPHPFYYCCSSLASSSNSLRGFYSLKESLNHHFGGMKETSTSTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSETQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRSNNSHKLMRVKSMVNLRSETLHRSLVEMLKKRLFNTVGAMENIGYQKP 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23539503 23546024 + CcPI632755_04g008190.1 Cco04g0819 176044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0819 598 Gene3D - 310 382 - -
Cco04g0819 598 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cco04g0819 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0819 598 SMART serkin_6 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0819 598 CDD STKc_WNK 15 275 - -
Cco04g0819 598 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Cco04g0819 598 FunFam probable serine/threonine-protein kinase WNK9 100 281 - -
Cco04g0819 598 SUPERFAMILY Protein kinase-like (PK-like) 19 424 IPR011009 -
Cco04g0819 598 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cco04g0819 598 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0819 598 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0819 598 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 592 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco04g0819 598 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2037 Cco-Chr2:33377409 Cco04g0819 Cco-Chr4:23539503 1.40E-163 dispersed
Cco04g0819 Cco-Chr4:23539503 Cco06g1045 Cco-Chr6:14725954 5.20E-117 dispersed
Cco04g0819 Cco-Chr4:23539503 Cco06g0628 Cco-Chr6:6951084 5.00E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86734 PF00069 Pkinase 1.70E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0819 K08867 - csv:101207665 979.163