Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0823 ATGGCGGTTTCTCCCCACTCTTTTCCGCCGAGGAAACGGCGGCCGTCCGCCGCCGCTTTCGTCTCTCCCAAACTCTCCGTCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCCCAAGAAATCTCCGGCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCAAGATTGCTTGAGATTTTCCTCGACGACCTCCGCCGCAACCGGACCGTTTCGCTCTCCGCCTCCGCCTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGATTGTTCTAACGGAAGCAAGATGTGGTTACTTACCCAGAATGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATCTTCCCTGTCAAAGACGCTGAATTAACAGAAGACGTTGAAGAATTGTTTTACCTCTTGAAAAATCAGTGCTCTGAATCCGCCGCTTTCCTCGATCCAAGAGATGAAACTCTCCGATTCAGATTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTCGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTGGAAGATGAAATTCAGAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTATATGGAGCATCGACGGCGGAATATGGTTTCCGGCGGAAAGATTCGATTTCCGATTTGCCTGTACCGGCGGATTTCAGATGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATAACTCTGTGGATTGAATCTGGGCATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGATGAAACGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAATAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGCTAATTCTTCCGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTGCCGTTACTCCTCCGATATCTCAACTCCGACAACCCGATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTCGAAGCCAACAAATCGCTGATAATGGAAACCGACGGCGCGCTGATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGTAACGCCGCTGCCACTATATTCAGCCTCTCCAGTATCCATTCTTACCGACGGAGATTGGGAAGGAAGACACGCGTCATAAAGGGATTGCTTGATTTGGCTAAAGACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGATTAATCGAAGGTGGGATTATGGAGACGGTAAGTCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAAGGCTCCGATAGGGCCAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAACAGATGGGGAGTGGTACAATTAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGTAATAGGTGGTGCCGGAGGAGATTCCTTAACGGTTACTTCGTCGAGAATCGGCGGCGATTCAACCACCATTGTTAGTTCGTCAAGAGGAGCAACTGTGCATAGCTAG 2064 49.81 MAVSPHSFPPRKRRPSAAAFVSPKLSVPILLESLLSLSQEISGMKPLQFLLNRYSNSMIRKSRLLEIFLDDLRRNRTVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAELTEDVEELFYLLKNQCSESAAFLDPRDETLRFRLLKMIDRIKDEIVPDYSELSEIFSRIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTAEYGFRRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDETESNKERVNDVTLNKAALEAMRMTATFLVNKLATSANSSVNDVVYELRVLAKTDPGSRGYIAQAGALPLLLRYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIKGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGIMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWEQMGSGTIRGRRKAASLLRILRRWAAGLDVIGGAGGDSLTVTSSRIGGDSTTIVSSSRGATVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23607535 23609598 - CcPI632755_04g008230.1 Cco04g0823 176048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0823 687 CDD RING-Ubox_PUB 270 322 IPR045210 -
Cco04g0823 687 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Cco04g0823 687 PANTHER U BOX DOMAIN-CONTAINING 52 648 - -
Cco04g0823 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Cco04g0823 687 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0823 687 SUPERFAMILY RING/U-box 260 342 - -
Cco04g0823 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 353 IPR013083 -
Cco04g0823 687 Pfam U-box domain 269 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0823 687 Gene3D - 370 646 IPR011989 -
Cco04g0823 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g0823 687 Coils Coil 208 235 - -
Cco04g0823 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Cco04g0823 687 Pfam Armadillo/beta-catenin-like repeat 400 438 IPR000225 GO:0005515(InterPro)
Cco04g0823 687 Gene3D - 54 141 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0707 Cco-Chr3:7294835 Cco04g0823 Cco-Chr4:23607535 3.30E-102 dispersed
Cco04g0823 Cco-Chr4:23607535 Cco11g0617 Cco-Chr11:6635883 2.40E-97 dispersed
Cco04g0823 Cco-Chr4:23607535 Cco01g1448 Cco-Chr1:26233303 6.90E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0823 - - - 0.0