Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0824 ATGCCGGCGTTCGACGACAATCCTCCGCCGGGGGGACTCACCCGCGGCGACTCCTTGCCGGAGGGAATTCTCTTCGGCAAGTACGAACTCGGTAAGCTTCTCGGATGTGGAGCTTTCGCTAAGGTCTATCATGGCAGAAACGTTGTTACAGGACAGAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTTCTGAAAGGGGGTTTCACGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCCAACGTCGTTCGTCTCTTTGAAGTTCTCGCCACCAAGACCAAGATTTATTTCGTTATGGAGTTCGCAAAAGGAGGAGAACTGTTTGCCAAAGTTTCTAAAGGAAGATTCAGTGAGAATCTCAGCCGTCGGTACTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGCGATTTGAAACCAGAAAATCTCCTTCTCGATGATAATTTCGATCTCAGAGTTTCGGATTTTGGACTTAGTGCTCTTACAGATCAGATTCGTCCTGACGGATTACTTCACACGCTTTGTGGAACTCCGGCCTACGTCGCACCGGAGATTCTCGCTAAAAAAGGCTACGACGGCGCTAAAATCGATGTCTGGTCTTGCGGTATAATCCTCTATGTTCTTACAACTGGATACCTTCCTTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGTTGCCCGAAGTGGACATCTCCAGATCTACGGCGGTTTCTCTCGAGGCTTCTCGATACGAATCCTGAGACGAGGATTACCGTCGATGAGATTTATCGAGATCCGTGGTTTGTGAAGGGATTTCAGGAGGAGAAATTTCAACAACTTGAAGATTCTCCTTCTGAGCTTTACGGTGATGTGAACAATGCGAAATGTTTGACTGCTTTTGATCTTATTTCTTTCTCACCTGGTTTCGATTTGACTGGACTGATCAATGAGACGGAATTTTCTTCTGGCGTTGAGAGGTTTCTCTCCGCTGAGTCGCCTGAGAAGATCATTGTGACGGTTGAGGAGATTACGAAGTCGGAGAATGCGGTTGTGGAAAAGAACGGCTGGGGAGCTAAAGTGGAAGGAATGGACGGCGGATTCGTGGCCGTGATCGATATTTTCCGGCTGACGGAGGAATTGGTGATTGTTGAGATTAAAAACAGAGTGAGGGAAATAGATCAAGATCGTCAAATTTGGAAAGATATATTGAGACCTCAACTTGAGTGTTTAATCTACCGGTCGGATTGA 1290 46.59 MPAFDDNPPPGGLTRGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVVTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIYRDPWFVKGFQEEKFQQLEDSPSELYGDVNNAKCLTAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEITKSENAVVEKNGWGAKVEGMDGGFVAVIDIFRLTEELVIVEIKNRVREIDQDRQIWKDILRPQLECLIYRSD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23648517 23649806 + CcPI632755_04g008240.1 Cco04g0824 176049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0824 429 FunFam Non-specific serine/threonine protein kinase 20 305 - -
Cco04g0824 429 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524(InterPro)
Cco04g0824 429 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0824 429 Gene3D Transferase(Phosphotransferase) domain 1 22 311 - -
Cco04g0824 429 CDD CIPK_C 312 421 - -
Cco04g0824 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco04g0824 429 SUPERFAMILY Protein kinase-like (PK-like) 24 303 IPR011009 -
Cco04g0824 429 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0824 429 Gene3D Kinase associated domain 1, KA1 312 427 - -
Cco04g0824 429 SMART serkin_6 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0824 429 Pfam NAF domain 309 367 IPR004041 GO:0007165(InterPro)
Cco04g0824 429 FunFam Aurora kinase A 22 111 - -
Cco04g0824 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0824 429 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2039 Cco-Chr2:33398007 Cco04g0824 Cco-Chr4:23648517 1.10E-142 dispersed
Cco04g0824 Cco-Chr4:23648517 Cco04g2163 Cco-Chr4:35364142 3.50E-131 dispersed
Cco04g0824 Cco-Chr4:23648517 Cco04g0826 Cco-Chr4:23749442 6.60E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86735 PF00069 Pkinase 2.40E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0824 - - - 0.0