Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0826 ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGTGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTAAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGCGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCTCGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGAGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGTGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGTAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACATAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTGTTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCAAAGGGCCTGAAATTGAAAATCAAGAAGAAGGACAGAGGCCTACTGAAGATTGAAGGATGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAGAAGTCAAACGGAGATACTATGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAACTCAACAACAGTCTTCTACTGATTCATTATAA 1401 40.19 MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDIDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTMEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQETQQQSSTDSL 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23749442 23750842 - CcPI632755_04g008260.1 Cco04g0826 176051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0826 466 Pfam NAF domain 314 372 IPR004041 GO:0007165(InterPro)
Cco04g0826 466 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Cco04g0826 466 CDD CIPK_C 318 432 - -
Cco04g0826 466 Gene3D Kinase associated domain 1, KA1 311 437 - -
Cco04g0826 466 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0826 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0826 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 425 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco04g0826 466 Gene3D Transferase(Phosphotransferase) domain 1 92 289 - -
Cco04g0826 466 FunFam Non-specific serine/threonine protein kinase 2 287 - -
Cco04g0826 466 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cco04g0826 466 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0826 466 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165(InterPro)
Cco04g0826 466 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0826 466 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cco04g0826 466 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cco04g0826 466 FunFam Non-specific serine/threonine protein kinase 312 436 - -
Cco04g0826 466 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2040 Cco-Chr2:33401936 Cco04g0826 Cco-Chr4:23749442 8.10E-174 dispersed
Cco03g0684 Cco-Chr3:7068521 Cco04g0826 Cco-Chr4:23749442 2.60E-172 dispersed
Cco04g0826 Cco-Chr4:23749442 Cco06g1418 Cco-Chr6:24685348 2.90E-147 dispersed
Cco04g0824 Cco-Chr4:23648517 Cco04g0826 Cco-Chr4:23749442 6.60E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86736 PF00069 Pkinase 2.50E-76 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0826 K07198 - csv:116406388 812.372