Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0826 | ATGGAGAACAAAGGGGCTATCTTGATGGAACGTTATGAATTAGGAAGGCTGCTGGGGCAGGGGACCTTTGCCAAGGTTTACTATGCTAGAGACATTAAAACTGGCATGAGTGTGGCTATCAAAGTTATTGACAAAGAGAAGATCTTGAAGGTTGGAATGATTGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAGTAAAGCATCCCAACATCGTTGAGCTTTATGAGGTTATGGCAAGTAAAACTAAAATTTACTTTGTCATGGAATATGTCAAGGGCGGTGAGCTATTCAATAAGGTATCCAAAGGAAAGCTTAAAGAATCTGTTGCTCGGAAATATTTTTGGCAGCTGATCAGTGCTGTTGATTATTGCCACAGTAGAGGAGTATGCCATCGGGATTTGAAGCCTGAAAATTTATTATTGGATGAACATGGTAATCTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCTGAATCTAAACGCCAAGATGGATTACTCCATACTACGTGTGGAACACCTGCTTATGTAGCTCCAGAAGTCATTAACAGGAGAGGTTACGATGGATGTAAAGCTGATATTTGGTCTTGTGGAGTGATTTTATTTGTTCTATTGGCCGGTTATCTCCCATTCAATGATCCTAATCTAATGGAGATGTATAAGAAGATTGGAAAAGGAGAATTTAAATTCCCCAACTGGTTTGCACCAGATGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATATCTATTGCCAAAATAATGGCAAGTTCTTGGTTGAGGAGGGAGTTCAATGTGAAATCACAAATTAATGCAGAGGAAGTGAAAGAATTGGCTCCTTTGGACGTTGATGCAGTTTTTGTGTCTACAGCTGAGGACATAGACTCCATTAGAAGAGAGCAGAAGCAAGAAATGGAAAAGCCATTGAATTTGAATGCTTTCGACATAATCTCCTTGTCATCAGGTTTTGATTTGTCAGGATTGTTCGAGGAGACTGATCTAAAGAAAGAAGTGAGATTCACATCAAACAAGCCTGCTTCCACGATCATCTCAAAACTGCAAGACATTGCAAAGGGCCTGAAATTGAAAATCAAGAAGAAGGACAGAGGCCTACTGAAGATTGAAGGATGTAAGGAAGGTCGAAAAGGAGCCGTATGTATTGACGCAGAGATTTTTGAGGTTACCCCATCATTCCATATTGTGGAAATGAAGAAGTCAAACGGAGATACTATGGAATATCGGAAGATAATGAAAGATGATATTAGACCTGCTCTGAAGGACATTGTCTGGACCTGGCAAGGCGAACAGCATCAGAGACGGCTCTTACAAGTAGAACAACAAGGACAAGAAACTCAACAACAGTCTTCTACTGATTCATTATAA | 1401 | 40.19 | MENKGAILMERYELGRLLGQGTFAKVYYARDIKTGMSVAIKVIDKEKILKVGMIDQIKREISVMRLVKHPNIVELYEVMASKTKIYFVMEYVKGGELFNKVSKGKLKESVARKYFWQLISAVDYCHSRGVCHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFNDPNLMEMYKKIGKGEFKFPNWFAPDVRKLLSKILDPNPNTRISIAKIMASSWLRREFNVKSQINAEEVKELAPLDVDAVFVSTAEDIDSIRREQKQEMEKPLNLNAFDIISLSSGFDLSGLFEETDLKKEVRFTSNKPASTIISKLQDIAKGLKLKIKKKDRGLLKIEGCKEGRKGAVCIDAEIFEVTPSFHIVEMKKSNGDTMEYRKIMKDDIRPALKDIVWTWQGEQHQRRLLQVEQQGQETQQQSSTDSL | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23749442 | 23750842 | - | CcPI632755_04g008260.1 | Cco04g0826 | 176051 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0826 | 466 | Pfam | NAF domain | 314 | 372 | IPR004041 | GO:0007165(InterPro) | |
Cco04g0826 | 466 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 267 | IPR011009 | - | |
Cco04g0826 | 466 | CDD | CIPK_C | 318 | 432 | - | - | |
Cco04g0826 | 466 | Gene3D | Kinase associated domain 1, KA1 | 311 | 437 | - | - | |
Cco04g0826 | 466 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0826 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0826 | 466 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 425 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco04g0826 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 92 | 289 | - | - | |
Cco04g0826 | 466 | FunFam | Non-specific serine/threonine protein kinase | 2 | 287 | - | - | |
Cco04g0826 | 466 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
Cco04g0826 | 466 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0826 | 466 | ProSiteProfiles | NAF domain profile. | 312 | 336 | IPR018451 | GO:0007165(InterPro) | |
Cco04g0826 | 466 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0826 | 466 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 91 | - | - | |
Cco04g0826 | 466 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Cco04g0826 | 466 | FunFam | Non-specific serine/threonine protein kinase | 312 | 436 | - | - | |
Cco04g0826 | 466 | CDD | STKc_SnRK3 | 11 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2040 | Cco-Chr2:33401936 | Cco04g0826 | Cco-Chr4:23749442 | 8.10E-174 | dispersed | |
Cco03g0684 | Cco-Chr3:7068521 | Cco04g0826 | Cco-Chr4:23749442 | 2.60E-172 | dispersed | |
Cco04g0826 | Cco-Chr4:23749442 | Cco06g1418 | Cco-Chr6:24685348 | 2.90E-147 | dispersed | |
Cco04g0824 | Cco-Chr4:23648517 | Cco04g0826 | Cco-Chr4:23749442 | 6.60E-114 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86736 | PF00069 | Pkinase | 2.50E-76 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0826 | K07198 | - | csv:116406388 | 812.372 |