Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0852 ATGACGTCTGAGAATTCTAGTGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGCGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGGAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGGCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATATGCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGACACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATTTGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCATGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAGTTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTATGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCATGGATGA 1125 42.13 MTSENSSGEKTSRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSICNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEDTARNRVNYTDATFYDSNICNRLTEGNIKEGLADVVRSHDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCMAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFHG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24101945 24103248 + CcPI632755_04g008520.1 Cco04g0852 176077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0852 374 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677(InterPro)
Cco04g0852 374 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 284 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco04g0852 374 Pfam AP2 domain 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 CDD AP2 71 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 SMART rav1_2 72 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 FunFam Ethylene-responsive transcription factor 2 71 139 - -
Cco04g0852 374 Coils Coil 194 214 - -
Cco04g0852 374 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g0852 374 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0852 Cco-Chr4:24101945 Cco11g0613 Cco-Chr11:6571005 2.70E-39 dispersed
Cco02g1215 Cco-Chr2:22625311 Cco04g0852 Cco-Chr4:24101945 6.80E-40 transposed
Cco11g0619 Cco-Chr11:6659177 Cco04g0852 Cco-Chr4:24101945 1.10E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59021 PF00847 AP2 7.50E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0852 - - - 0.0