Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0860 | ATGGCCACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTCCGCCGCCGACCCATGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGCGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGGCTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACATGCAGTCTATTTCTCAGTGTATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGCTGACGAGCGACGCGGTGATAACGCCGATGGACGTGGTGAAACAGAGGCTACAGTTGAAGAGCAGTCCTTATAAAGGGGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTACGCCTCTTATCGGACGACGGTTGTGATGAACGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTTTCACTGGGAAGTGACAACGATGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGTTGTGTAGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGGTTCCGAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAATGACAACAATTAG | 936 | 52.24 | MATSVSHSPDFRPEVSVPPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATLTSDAVITPMDVVKQRLQLKSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSLGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWVPRMMFHAPAAAICWSTYEASKTFFQHLHNDNN | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24188982 | 24191081 | - | CcPI632755_04g008600.1 | Cco04g0860 | 176085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0860 | 311 | PANTHER | MITOFERRIN-1-RELATED | 20 | 305 | - | GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER) | |
Cco04g0860 | 311 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 212 | 302 | IPR018108 | - | |
Cco04g0860 | 311 | PRINTS | Mitochondrial carrier protein signature | 173 | 191 | IPR002067 | GO:0055085(InterPro) | |
Cco04g0860 | 311 | PRINTS | Mitochondrial carrier protein signature | 30 | 43 | IPR002067 | GO:0055085(InterPro) | |
Cco04g0860 | 311 | PRINTS | Mitochondrial carrier protein signature | 43 | 57 | IPR002067 | GO:0055085(InterPro) | |
Cco04g0860 | 311 | PRINTS | Mitochondrial carrier protein signature | 131 | 149 | IPR002067 | GO:0055085(InterPro) | |
Cco04g0860 | 311 | PRINTS | Mitochondrial carrier protein signature | 221 | 243 | IPR002067 | GO:0055085(InterPro) | |
Cco04g0860 | 311 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 25 | 109 | IPR018108 | - | |
Cco04g0860 | 311 | SUPERFAMILY | Mitochondrial carrier | 23 | 297 | IPR023395 | - | |
Cco04g0860 | 311 | Pfam | Mitochondrial carrier protein | 213 | 305 | IPR018108 | - | |
Cco04g0860 | 311 | Pfam | Mitochondrial carrier protein | 116 | 203 | IPR018108 | - | |
Cco04g0860 | 311 | Pfam | Mitochondrial carrier protein | 25 | 111 | IPR018108 | - | |
Cco04g0860 | 311 | Gene3D | Mitochondrial carrier domain | 111 | 311 | IPR023395 | - | |
Cco04g0860 | 311 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 116 | 200 | IPR018108 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2063 | Cco-Chr2:33574216 | Cco04g0860 | Cco-Chr4:24188982 | 1.00E-122 | dispersed | |
Cco04g0860 | Cco-Chr4:24188982 | Cco08g0800 | Cco-Chr8:19839261 | 2.80E-29 | dispersed | |
Cco04g0860 | Cco-Chr4:24188982 | Cco08g0871 | Cco-Chr8:20555207 | 7.10E-33 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0860 | K15113 | - | csv:101210464 | 592.808 |