Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0860 ATGGCCACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTCCGCCGCCGACCCATGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGCGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGGCTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACATGCAGTCTATTTCTCAGTGTATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGCTGACGAGCGACGCGGTGATAACGCCGATGGACGTGGTGAAACAGAGGCTACAGTTGAAGAGCAGTCCTTATAAAGGGGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTACGCCTCTTATCGGACGACGGTTGTGATGAACGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTTTCACTGGGAAGTGACAACGATGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGTTGTGTAGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGGTTCCGAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAATGACAACAATTAG 936 52.24 MATSVSHSPDFRPEVSVPPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATLTSDAVITPMDVVKQRLQLKSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSLGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWVPRMMFHAPAAAICWSTYEASKTFFQHLHNDNN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24188982 24191081 - CcPI632755_04g008600.1 Cco04g0860 176085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0860 311 PANTHER MITOFERRIN-1-RELATED 20 305 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Cco04g0860 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
Cco04g0860 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085(InterPro)
Cco04g0860 311 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085(InterPro)
Cco04g0860 311 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085(InterPro)
Cco04g0860 311 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085(InterPro)
Cco04g0860 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Cco04g0860 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 109 IPR018108 -
Cco04g0860 311 SUPERFAMILY Mitochondrial carrier 23 297 IPR023395 -
Cco04g0860 311 Pfam Mitochondrial carrier protein 213 305 IPR018108 -
Cco04g0860 311 Pfam Mitochondrial carrier protein 116 203 IPR018108 -
Cco04g0860 311 Pfam Mitochondrial carrier protein 25 111 IPR018108 -
Cco04g0860 311 Gene3D Mitochondrial carrier domain 111 311 IPR023395 -
Cco04g0860 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2063 Cco-Chr2:33574216 Cco04g0860 Cco-Chr4:24188982 1.00E-122 dispersed
Cco04g0860 Cco-Chr4:24188982 Cco08g0800 Cco-Chr8:19839261 2.80E-29 dispersed
Cco04g0860 Cco-Chr4:24188982 Cco08g0871 Cco-Chr8:20555207 7.10E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0860 K15113 - csv:101210464 592.808