Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0890 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTTACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCTAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCTCCTCCGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCCGCTTACATCGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCTGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCTGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACATGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1344 45.98 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNMRLQSSNQAIFRA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24556687 24562168 + CcPI632755_04g008900.1 Cco04g0890 176115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0890 447 FunFam Vacuolar cation/proton exchanger 122 266 - -
Cco04g0890 447 NCBIfam calcium/proton exchanger 76 421 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cco04g0890 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 425 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cco04g0890 447 FunFam Vacuolar cation/proton exchanger 267 422 - -
Cco04g0890 447 Gene3D - 122 422 IPR044880 -
Cco04g0890 447 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g0890 447 Pfam Sodium/calcium exchanger protein 278 421 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1143 Cco-Chr2:19353910 Cco04g0890 Cco-Chr4:24556687 1.30E-93 transposed
Cco07g1500 Cco-Chr7:29074926 Cco04g0890 Cco-Chr4:24556687 8.70E-92 transposed
Cco10g0404 Cco-Chr10:4771914 Cco04g0890 Cco-Chr4:24556687 2.00E-92 transposed
Cco10g2192 Cco-Chr10:34992493 Cco04g0890 Cco-Chr4:24556687 3.60E-163 wgd
Cco03g0081 Cco-Chr3:826407 Cco04g0890 Cco-Chr4:24556687 3.00E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0890 K07300 - csv:101213857 787.334