Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0901 ATGGCCACCGCCGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACGATATCCGACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAGTATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTAATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCTGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGTTTCAGCTTTCCCAGCATTTGCATTGTAAGGGAAGGAAATCGAGGATTGGTAGAGATATTGCTGCAAGGAGAGGAGATGGGAAGGCTATTTTTTATTACTCTGGAAGGAAATTTTTATAGTTGCAAACACTGTAAAACTCATCTCGCCCTTTCTAAAGACATAATTTCAAGGACTTTTCATTGCAGGCATGGGAGGGCTTACTTATTTAATAACGTTGTCAATATCACAGTTGGAGAACAAGAAGAGCGGATGATGATCACGGGATTGCACACTGTTGTTGACATATTTTGTGTTGGTTGTGGCTCAATTCTTGGTTGGAAATATGAGGTTGCCTATGACAAATCCCAAAAGTACAAGGAAGGAAAATATATTCTTGAAATGTTCAAGGTGTTGGGTCCTGATGGAAACAGCTACTTAGCAAGTCATGATCCGCAGCTTGCGGGTAGCGATGGCGATGATGCTTGA 1215 49.79 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFSFPSICIVREGNRGLVEILLQGEEMGRLFFITLEGNFYSCKHCKTHLALSKDIISRTFHCRHGRAYLFNNVVNITVGEQEERMMITGLHTVVDIFCVGCGSILGWKYEVAYDKSQKYKEGKYILEMFKVLGPDGNSYLASHDPQLAGSDGDDA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24676469 24682164 - CcPI632755_04g009010.1 Cco04g0901 176126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0901 404 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 256 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco04g0901 404 ProSiteProfiles Yippee domain profile. 287 384 IPR034751 -
Cco04g0901 404 Pfam Chlorophyll A-B binding protein 59 253 IPR022796 -
Cco04g0901 404 SUPERFAMILY Chlorophyll a-b binding protein 44 254 - -
Cco04g0901 404 Gene3D Chlorophyll a/b binding protein domain 53 258 - -
Cco04g0901 404 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 289 379 IPR004910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0643 Cco-Chr3:6527453 Cco04g0901 Cco-Chr4:24676469 2.40E-35 dispersed
Cco04g0901 Cco-Chr4:24676469 Cco07g0421 Cco-Chr7:4631764 4.40E-43 dispersed
Cco08g0827 Cco-Chr8:20104599 Cco04g0901 Cco-Chr4:24676469 4.40E-25 transposed
Cco10g2187 Cco-Chr10:34972337 Cco04g0901 Cco-Chr4:24676469 3.60E-124 transposed
Cco11g0635 Cco-Chr11:6888802 Cco04g0901 Cco-Chr4:24676469 5.00E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0901 K08915 - csv:101208740 479.559