Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0913 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGATACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACATATAGAGACTGCTGTAAGCATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTCTCGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCGTCCAAGGTTCCTCTGGGCGAATCCTTCAATGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATCGATTTGACAAATTCTTATCGTTATTATACAACAGCAGATTTGAATAAGGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCCGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATGCAGTTCCTATCTCGTCAGAAACACTCGAAGAAGTATATTCTTGTCCATTGTACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTCGTGCGTGCACTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTGCTGATGCACGCCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGAAGCAGTTGTTTGTCCATCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGCGAAGCAGTTCCAGATGATGATGATGATGGAGGTCCTGCCGCTCCTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCTGGGTCGCATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTCGAAGAGTCCAAATGAGATTCCCATACAGAAATGCAAATGATGGCCAAGGCGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATTATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATCAATCATGTTCCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTCTGAGCGCCAGAGTATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCCACGGTTACCAAACTTTTGAAGGAGTTCATACCTAGGCTTTCACATGATGCTGATGGTCTGATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCCTATTCGAGTTGGGTGAAGATGATTCTGAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGGGATCCCTCCTTTTATTCAGGAAAGATTGTCGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGATTGATAGTAAAGCAGCTCAACATACGAATTCAACACGACGGAGCGGAAAGACGCCACTGCAGTTGGATTACACGGATCCTTTCTGGGGGTTTTGGCAATTTGATGTTGTTGGCTTTGCGTTTCATCTTGCGGAGTCTCGTTTGAGGGTCTCCCAGGGCTTCGTTCCCTCAATTTCCATTGATCTTTGA 2187 42.43 MIVSMDLNASPVPEEDEDTFERHEEVYSAPEEHIETAVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTADLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVMQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFADARPPGIYKPDYVDALYTFYHERKPEAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQGEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHVPVIERPFYERWKMLEKEVIEPRNSERQSIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSEVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRIDSKAAQHTNSTRRSGKTPLQLDYTDPFWGFWQFDVVGFAFHLAESRLRVSQGFVPSISIDL 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24822682 24843369 - CcPI632755_04g009130.1 Cco04g0913 176138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0913 728 CDD Adenylation_mRNA_capping 324 552 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cco04g0913 728 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0016311(InterPro)
Cco04g0913 728 SUPERFAMILY Nucleic acid-binding proteins 554 665 IPR012340 -
Cco04g0913 728 FunFam mRNA capping enzyme family protein 82 296 - -
Cco04g0913 728 Gene3D Protein tyrosine phosphatase superfamily 81 294 IPR029021 -
Cco04g0913 728 MobiDBLite consensus disorder prediction 22 66 - -
Cco04g0913 728 FunFam mRNA capping enzyme, putative 312 549 - -
Cco04g0913 728 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311(InterPro)
Cco04g0913 728 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 313 552 - -
Cco04g0913 728 ProSiteProfiles ATP-dependent DNA ligase family profile. 435 580 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cco04g0913 728 MobiDBLite consensus disorder prediction 1 85 - -
Cco04g0913 728 CDD RNA_5'-triphosphatase 89 255 - -
Cco04g0913 728 PANTHER MRNA-CAPPING ENZYME 78 654 IPR051029 GO:0004484(PANTHER)|GO:0006370(PANTHER)
Cco04g0913 728 PIRSF mRNA_capping_HCE 73 684 IPR017074 GO:0004484(InterPro)|GO:0006370(InterPro)|GO:0140818(InterPro)
Cco04g0913 728 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cco04g0913 728 Gene3D DNA ligase/mRNA capping enzyme 312 549 - -
Cco04g0913 728 MobiDBLite consensus disorder prediction 275 309 - -
Cco04g0913 728 Pfam mRNA capping enzyme, C-terminal domain 581 649 IPR013846 -
Cco04g0913 728 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311(InterPro)
Cco04g0913 728 Gene3D - 550 658 IPR012340 -
Cco04g0913 728 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Cco04g0913 728 FunFam mRNA capping enzyme family protein 550 658 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0913 K13917 - csv:101209960 1311.21