Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g0927 | ATGAGCATTCCTGGATTCTCTTTTGATGACTGTACAATGGAAAGGAGCCTTATTAATTCCCATCTCGATGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTTGGTGGCTGCCGCTCCTGGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA | 594 | 46.8 | MSIPGFSFDDCTMERSLINSHLDVGFLSAWKALETAGADLEKEWQRAAAAATAERGSGVGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAALVAAAPGGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS | 197 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24951615 | 24955855 | + | CcPI632755_04g009270.1 | Cco04g0927 | 176152 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g0927 | 197 | SMART | ringv_2 | 69 | 122 | IPR011016 | GO:0008270(InterPro) | |
| Cco04g0927 | 197 | PANTHER | ZINC FINGER, RING-CH-TYPE | 48 | 196 | - | - | |
| Cco04g0927 | 197 | SUPERFAMILY | RING/U-box | 67 | 125 | - | - | |
| Cco04g0927 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 131 | IPR013083 | - | |
| Cco04g0927 | 197 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 62 | 128 | IPR011016 | GO:0008270(InterPro) | |
| Cco04g0927 | 197 | Pfam | RING-variant domain | 70 | 121 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g0927 | Cco-Chr4:24951615 | Cco04g2165 | Cco-Chr4:35394101 | 3.20E-15 | dispersed | |
| Cco11g0657 | Cco-Chr11:7169325 | Cco04g0927 | Cco-Chr4:24951615 | 4.30E-31 | wgd | |
| Cco03g0107 | Cco-Chr3:1114517 | Cco04g0927 | Cco-Chr4:24951615 | 1.30E-28 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g0927 | - | - | - | 0.0 |