Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0927 ATGAGCATTCCTGGATTCTCTTTTGATGACTGTACAATGGAAAGGAGCCTTATTAATTCCCATCTCGATGTTGGATTCTTGTCCGCGTGGAAAGCTTTAGAGACGGCCGGAGCTGATTTGGAGAAAGAGTGGCAGCGGGCGGCGGCGGCGGCAACGGCGGAGAGGGGAAGTGGAGTTGGTGAAGTGAAGGTGAAGTTGGAGAGAGATTGTAGGATTTGCCATTTGGGTTTAGAGAGCAATAGCAGTGAGTTTGGAGTTGGAATTGAATTGGGTTGTTGTTGTAAGAATGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAATCAGAGGAAACAAGACATGTGAGATATGTCATTCTATTGTAAGAAATGTAATGGTAGCACATGAATTTGAACAAACGGAGCAAGTCCATGGGTCGAACAATGGGACGGTATCAACGGCCACGGTTGCAGCGTTGGTGGCTGCCGCTCCTGGTGGTGGCCGGAGCTTTTGGCATGTTCACCGAGTCCTTAATTTTCTTCTTGCTTGTATGGTATTTGCTTTTGTCATATCTTGGCTCTTTCATTTCAATGTGCCATCATAA 594 46.8 MSIPGFSFDDCTMERSLINSHLDVGFLSAWKALETAGADLEKEWQRAAAAATAERGSGVGEVKVKLERDCRICHLGLESNSSEFGVGIELGCCCKNDLGAAHKHCAEAWFKIRGNKTCEICHSIVRNVMVAHEFEQTEQVHGSNNGTVSTATVAALVAAAPGGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 197
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 24951615 24955855 + CcPI632755_04g009270.1 Cco04g0927 176152
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0927 197 SMART ringv_2 69 122 IPR011016 GO:0008270(InterPro)
Cco04g0927 197 PANTHER ZINC FINGER, RING-CH-TYPE 48 196 - -
Cco04g0927 197 SUPERFAMILY RING/U-box 67 125 - -
Cco04g0927 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 131 IPR013083 -
Cco04g0927 197 ProSiteProfiles Zinc finger RING-CH-type profile. 62 128 IPR011016 GO:0008270(InterPro)
Cco04g0927 197 Pfam RING-variant domain 70 121 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0927 Cco-Chr4:24951615 Cco04g2165 Cco-Chr4:35394101 3.20E-15 dispersed
Cco11g0657 Cco-Chr11:7169325 Cco04g0927 Cco-Chr4:24951615 4.30E-31 wgd
Cco03g0107 Cco-Chr3:1114517 Cco04g0927 Cco-Chr4:24951615 1.30E-28 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0927 - - - 0.0