Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0938 | ATGGCAGAGCATGTTCAAGTGTTTGGTTTCTGGGAAAGTGCGTTCAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTTATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTACTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATCGTTTCCTTTATGCAAGCTAATTGGAAAGTTTGA | 654 | 42.51 | MAEHVQVFGFWESAFSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKV | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25036088 | 25037286 | + | CcPI632755_04g009380.1 | Cco04g0938 | 176163 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0938 | 217 | FunFam | Tau class glutathione S-transferase | 1 | 87 | - | - | |
Cco04g0938 | 217 | SUPERFAMILY | GST C-terminal domain-like | 77 | 215 | IPR036282 | - | |
Cco04g0938 | 217 | CDD | GST_N_Tau | 5 | 79 | - | - | |
Cco04g0938 | 217 | FunFam | Tau class glutathione S-transferase | 85 | 217 | - | - | |
Cco04g0938 | 217 | SFLD | Main.3: Omega- and Tau-like | 2 | 213 | IPR045073 | - | |
Cco04g0938 | 217 | Pfam | Glutathione S-transferase, C-terminal domain | 98 | 193 | IPR004046 | - | |
Cco04g0938 | 217 | Pfam | Glutathione S-transferase, N-terminal domain | 5 | 77 | IPR004045 | - | |
Cco04g0938 | 217 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 5 | 212 | IPR045073 | GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER) | |
Cco04g0938 | 217 | CDD | GST_C_Tau | 89 | 213 | IPR045074 | GO:0004364(InterPro)|GO:0006749(InterPro) | |
Cco04g0938 | 217 | Coils | Coil | 114 | 142 | - | - | |
Cco04g0938 | 217 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 3 | 83 | IPR004045 | - | |
Cco04g0938 | 217 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 88 | 217 | IPR010987 | - | |
Cco04g0938 | 217 | Gene3D | Glutaredoxin | 1 | 84 | - | - | |
Cco04g0938 | 217 | Gene3D | - | 85 | 217 | - | - | |
Cco04g0938 | 217 | SFLD | Glutathione Transferase (cytosolic) | 2 | 213 | IPR040079 | - | |
Cco04g0938 | 217 | SUPERFAMILY | Thioredoxin-like | 5 | 106 | IPR036249 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1822 | Cco-Chr1:30847385 | Cco04g0938 | Cco-Chr4:25036088 | 9.40E-46 | dispersed | |
Cco04g0938 | Cco-Chr4:25036088 | Cco04g0951 | Cco-Chr4:25126869 | 5.20E-83 | dispersed | |
Cco04g0937 | Cco-Chr4:25033355 | Cco04g0938 | Cco-Chr4:25036088 | 2.60E-74 | tandem | |
Cco04g0938 | Cco-Chr4:25036088 | Cco04g0939 | Cco-Chr4:25039333 | 2.70E-63 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0938 | K00799 | - | csv:105435246 | 352.058 |