Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0938 ATGGCAGAGCATGTTCAAGTGTTTGGTTTCTGGGAAAGTGCGTTCAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTTATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTACTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATCGTTTCCTTTATGCAAGCTAATTGGAAAGTTTGA 654 42.51 MAEHVQVFGFWESAFSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25036088 25037286 + CcPI632755_04g009380.1 Cco04g0938 176163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0938 217 FunFam Tau class glutathione S-transferase 1 87 - -
Cco04g0938 217 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Cco04g0938 217 CDD GST_N_Tau 5 79 - -
Cco04g0938 217 FunFam Tau class glutathione S-transferase 85 217 - -
Cco04g0938 217 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
Cco04g0938 217 Pfam Glutathione S-transferase, C-terminal domain 98 193 IPR004046 -
Cco04g0938 217 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cco04g0938 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco04g0938 217 CDD GST_C_Tau 89 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco04g0938 217 Coils Coil 114 142 - -
Cco04g0938 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cco04g0938 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Cco04g0938 217 Gene3D Glutaredoxin 1 84 - -
Cco04g0938 217 Gene3D - 85 217 - -
Cco04g0938 217 SFLD Glutathione Transferase (cytosolic) 2 213 IPR040079 -
Cco04g0938 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1822 Cco-Chr1:30847385 Cco04g0938 Cco-Chr4:25036088 9.40E-46 dispersed
Cco04g0938 Cco-Chr4:25036088 Cco04g0951 Cco-Chr4:25126869 5.20E-83 dispersed
Cco04g0937 Cco-Chr4:25033355 Cco04g0938 Cco-Chr4:25036088 2.60E-74 tandem
Cco04g0938 Cco-Chr4:25036088 Cco04g0939 Cco-Chr4:25039333 2.70E-63 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0938 K00799 - csv:105435246 352.058