Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0940 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTTAAACTCAAGGGAGTTGATTATCAACACATTGACGAAGATTTGGTGAACAAAAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAAGTGCCGGTTCTTGTTCACCATGGGAAGCCCATTTCAGAGTCTCTTGTAATCCTTGAATACATCGAAGAAAAATGGAGAGAAAATTATCTAATCTTGCCCCAAGATCCCCATCAAAGAGCTCTTGCCAGATTTTGGGCCAAGTACATTGATGACAAGGTAGTGCCTGCAGTGCAGAAAGCTGCAAGAAGCAAAGAAGAAGAGAGAGAGAAGAGCATAGAAGAAGCTCAGGAGACATTGGAACCACTTGAGAAAGAGCTTAAAAACAAGTCGTTCTTTGGAGGAGACAAAATTGGATTTGTGGACATTGTAGGCCTGGTTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAACCCACAAATTTCCAAATCTAACCAAATGGGCTCAACATTTTGTGAACCACAGCGTTGCAAAGGAAGTTTTGCCTCAAAAAGATGTTCTTGTTGCCTTCTTGAAGAATGTTGTGTTTGTTCCAAAAAACTAG 669 42.0 MGEEEVQVFGFRSGPYSLRVELALKLKGVDYQHIDEDLVNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEEKWRENYLILPQDPHQRALARFWAKYIDDKVVPAVQKAARSKEEEREKSIEEAQETLEPLEKELKNKSFFGGDKIGFVDIVGLVLACWIPATEEAVGFELLSTHKFPNLTKWAQHFVNHSVAKEVLPQKDVLVAFLKNVVFVPKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25045200 25046213 + CcPI632755_04g009400.1 Cco04g0940 176165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0940 222 FunFam Glutathione S-transferase GSTU6 1 87 - -
Cco04g0940 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Cco04g0940 222 FunFam Tau class glutathione S-transferase 87 218 - -
Cco04g0940 222 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
Cco04g0940 222 Gene3D Glutaredoxin 1 86 - -
Cco04g0940 222 SFLD Glutathione Transferase (cytosolic) 2 215 IPR040079 -
Cco04g0940 222 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Cco04g0940 222 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cco04g0940 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Cco04g0940 222 CDD GST_C_Tau 91 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco04g0940 222 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Cco04g0940 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco04g0940 222 Gene3D - 87 220 - -
Cco04g0940 222 CDD GST_N_Tau 6 80 - -
Cco04g0940 222 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Cco04g0940 222 Coils Coil 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0940 K00799 - - csv:101215228 385.185
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0940 Cco-Chr4:25045200 Cco04g0951 Cco-Chr4:25126869 5.10E-86 dispersed
Cco04g0939 Cco-Chr4:25039333 Cco04g0940 Cco-Chr4:25045200 2.50E-56 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0578 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Cco09g0580 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 6.9e-64 240.7
Cco09g0579 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.8e-59 223.8
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.0e-63 239.2
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.9e-60 227.3
Cco09g0580 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 9.5e-60 227.3
Cco09g0578 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cco09g0579 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02930 56.2 5.8e-63 237.7
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cco09g0578 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cco09g0580 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.7 5.2e-64 241.1
Cco09g0579 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.6e-59 223.8
Cco09g0580 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.8 2.0e-68 256.1
Cco09g0578 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.6e-65 246.5
Cco09g0579 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.0e-61 233.8
Cco09g0581 . 1 214 Glutathione S-transferase Gene Family AT3G62760 58.4 2.0e-74 275.8
Cco09g0578 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cco04g0940 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.3 1.6e-63 239.6
Cco04g0938 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.8 4.7e-63 238.0
Cco04g0951 . 3 217 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-60 229.2
Cco05g0297 . 2 213 Glutathione S-transferase Gene Family AT3G09270 51.9 1.1e-59 226.9
Cco04g0953 . 3 212 Glutathione S-transferase Gene Family AT3G09270 52.8 1.1e-54 210.3
Cco05g2702 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 1.2e-87 319.7
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78380 61.3 3.2e-72 268.5
Cco01g0892 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.2e-68 253.8
Cco07g1132 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.5e-79 291.6
Cco07g1134 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cco01g0892 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cco07g1133 . 7 216 Glutathione S-transferase Gene Family AT1G78370 52.9 1.1e-61 233.4
Cco07g1132 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 5.4e-80 294.3
Cco07g1134 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.3e-80 293.5
Cco07g1133 . 1 217 Glutathione S-transferase Gene Family AT1G78340 53.9 7.1e-64 240.7
Cco01g0892 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cco07g1132 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 2.5e-60 228.8
Cco07g1132 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 1.5e-90 329.3
Cco07g1134 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Cco07g1133 . 1 220 Glutathione S-transferase Gene Family AT1G17180 56.4 2.1e-71 265.8
Cco01g0892 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.7e-68 256.1
Cco07g1132 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 1.5e-74 276.2
Cco07g1134 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cco07g1132 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 3.3e-72 268.5
Cco07g1134 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Cco07g1132 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.1 5.2e-70 261.2
Cco07g1134 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.4e-68 254.2
Cco01g0892 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.6e-64 240.4
Cco02g0032 . 55 221 Glutathione S-transferase Gene Family AT2G02390 67.7 1.1e-60 229.9
Cco05g0266 . 61 227 Glutathione S-transferase Gene Family AT2G02390 51.5 7.0e-47 184.1
Cco02g0032 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.5 3.2e-75 278.5
Cco05g0266 . 18 226 Glutathione S-transferase Gene Family AT2G02380 53.6 1.1e-59 226.9
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41210 68.4 9.1e-92 333.6
Cco07g0857 . 37 273 Glutathione S-transferase Gene Family AT5G41240 66.7 1.0e-88 324.7
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.3e-90 327.4
Cco10g2059 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.6e-83 305.4
Cco02g1483 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.5e-80 295.0
Cco02g1483 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.5e-85 313.2
Cco10g2060 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 1.6e-79 293.1
Cco10g2059 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.9e-78 287.3
Cco10g2060 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.8 7.6e-96 347.1
Cco10g2059 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cco02g1483 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.7e-82 301.6
Cco02g1456 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Cco02g1456 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.0e-86 314.3
Cco05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Cco05g1317 . 54 274 Glutathione S-transferase Gene Family AT5G16710 77.4 9.2e-103 370.2
Cco02g1456 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cco11g1651 . 515 770 Glutathione S-transferase Gene Family AT1G77290 69.1 4.3e-103 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162