Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0940 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTTAAACTCAAGGGAGTTGATTATCAACACATTGACGAAGATTTGGTGAACAAAAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAAGTGCCGGTTCTTGTTCACCATGGGAAGCCCATTTCAGAGTCTCTTGTAATCCTTGAATACATCGAAGAAAAATGGAGAGAAAATTATCTAATCTTGCCCCAAGATCCCCATCAAAGAGCTCTTGCCAGATTTTGGGCCAAGTACATTGATGACAAGGTAGTGCCTGCAGTGCAGAAAGCTGCAAGAAGCAAAGAAGAAGAGAGAGAGAAGAGCATAGAAGAAGCTCAGGAGACATTGGAACCACTTGAGAAAGAGCTTAAAAACAAGTCGTTCTTTGGAGGAGACAAAATTGGATTTGTGGACATTGTAGGCCTGGTTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAACCCACAAATTTCCAAATCTAACCAAATGGGCTCAACATTTTGTGAACCACAGCGTTGCAAAGGAAGTTTTGCCTCAAAAAGATGTTCTTGTTGCCTTCTTGAAGAATGTTGTGTTTGTTCCAAAAAACTAG 669 42.0 MGEEEVQVFGFRSGPYSLRVELALKLKGVDYQHIDEDLVNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEEKWRENYLILPQDPHQRALARFWAKYIDDKVVPAVQKAARSKEEEREKSIEEAQETLEPLEKELKNKSFFGGDKIGFVDIVGLVLACWIPATEEAVGFELLSTHKFPNLTKWAQHFVNHSVAKEVLPQKDVLVAFLKNVVFVPKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25045200 25046213 + CcPI632755_04g009400.1 Cco04g0940 176165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0940 222 FunFam Glutathione S-transferase GSTU6 1 87 - -
Cco04g0940 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Cco04g0940 222 FunFam Tau class glutathione S-transferase 87 218 - -
Cco04g0940 222 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
Cco04g0940 222 Gene3D Glutaredoxin 1 86 - -
Cco04g0940 222 SFLD Glutathione Transferase (cytosolic) 2 215 IPR040079 -
Cco04g0940 222 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Cco04g0940 222 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cco04g0940 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Cco04g0940 222 CDD GST_C_Tau 91 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco04g0940 222 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Cco04g0940 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco04g0940 222 Gene3D - 87 220 - -
Cco04g0940 222 CDD GST_N_Tau 6 80 - -
Cco04g0940 222 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Cco04g0940 222 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0940 Cco-Chr4:25045200 Cco04g0951 Cco-Chr4:25126869 5.10E-86 dispersed
Cco04g0939 Cco-Chr4:25039333 Cco04g0940 Cco-Chr4:25045200 2.50E-56 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0940 K00799 - csv:101215228 385.185