Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0951 ATGGCGGAAGAATTGCAAGTGTTTGGTTTCTGGTCAAGTCCGTTTAGTCTTAGAGTGGAGTTGGCTCTCAAACTCAAAGGCATCCGATACCAATACATTGAGGAAGATGTGATGAACAAAAAGAGCGATTTGCTGCTGAAATACAACCCAATTTACAAGAAGGTTCCTGTTCTTGTCCACCATGGAAAACCCATTTCAGAATCTCTTGTAATCCTTGAATACATCGATGAAAACTGGAGAGAAAATTATCCGATCTTGCCCCAACACCCCCACCAAAGAGCTCTTGCCAGAGTCTGGGCTAAGTATATTGATGACAAGGTTGTACCTGCGATAGTGAAAGCTGTTGGAAACAAAGGAGAAGAGATGGAGAAGGCTGTGGAAGAAGTGAAGGGGGCATTGGAACCACTTGAGAAAGAGCTTAAAATTGGCAACAAGTTGTTGGGCGGAGAAAGAATTGGGTTTGTGGACATTGTAGGCACCGCCGTAGCCTGCTGGTTGCCTGCCATTGAAGAAGCTTTAAGGATTGAGCTGCTAACAACCCACAAATTTCCAAACCTAAGACTATGGAGTGAAGAGCTTTCCAACCACAACGTGGTGAAGGAGCTTCTGCCTAAAAAGGATGAGGTTGTTGCCTTTGTGCAAGCTATTTTTTTCCCAAGAATTAATGGAAATTGTAATCCCTATCAAAAATCAAAAGGGTATTTGCAAATGTACAAACTTTTTCAACTAAAGATATGA 738 42.28 MAEELQVFGFWSSPFSLRVELALKLKGIRYQYIEEDVMNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIDENWRENYPILPQHPHQRALARVWAKYIDDKVVPAIVKAVGNKGEEMEKAVEEVKGALEPLEKELKIGNKLLGGERIGFVDIVGTAVACWLPAIEEALRIELLTTHKFPNLRLWSEELSNHNVVKELLPKKDEVVAFVQAIFFPRINGNCNPYQKSKGYLQMYKLFQLKI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25126869 25129311 - CcPI632755_04g009510.1 Cco04g0951 176176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0951 245 Gene3D - 86 220 - -
Cco04g0951 245 CDD GST_N_Tau 5 79 - -
Cco04g0951 245 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Cco04g0951 245 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco04g0951 245 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Cco04g0951 245 CDD GST_C_Tau 90 216 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco04g0951 245 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Cco04g0951 245 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cco04g0951 245 FunFam Tau class glutathione S-transferase 1 88 - -
Cco04g0951 245 Gene3D Glutaredoxin 1 85 - -
Cco04g0951 245 SFLD Main (cytGST) 2 216 - -
Cco04g0951 245 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 212 IPR010987 -
Cco04g0951 245 FunFam Tau class glutathione S-transferase 86 219 - -
Cco04g0951 245 Pfam Glutathione S-transferase, C-terminal domain 100 196 IPR004046 -
Cco04g0951 245 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1823 Cco-Chr1:30853306 Cco04g0951 Cco-Chr4:25126869 3.20E-46 dispersed
Cco04g0937 Cco-Chr4:25033355 Cco04g0951 Cco-Chr4:25126869 5.10E-70 dispersed
Cco04g0938 Cco-Chr4:25036088 Cco04g0951 Cco-Chr4:25126869 5.20E-83 dispersed
Cco04g0939 Cco-Chr4:25039333 Cco04g0951 Cco-Chr4:25126869 3.50E-58 dispersed
Cco04g0940 Cco-Chr4:25045200 Cco04g0951 Cco-Chr4:25126869 5.10E-86 dispersed
Cco04g0951 Cco-Chr4:25126869 Cco04g0953 Cco-Chr4:25137244 1.30E-66 dispersed
Cco04g0951 Cco-Chr4:25126869 Cco04g0952 Cco-Chr4:25131113 3.60E-48 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0951 K00799 - csv:105435246 314.694