Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0953 ATGAGGGAACAACTGCAGGTGTTTGGTCATAGGTTAAGTCCCTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCATAAAATACCAATATGTGGAGGAAGACATACCCAACAAAAGCCATTTGCTTCGGAAATACAATCCACTTTACAAGAAGGTCCCTGTGCTCGTCCATATTGGAAACCCCATTGCTGAGTCTCTTGTCATCCTTGAATACATTGATGAGCATTGGAAAACCAACCCCATCTTGCCCCAGCATCCTCTGGAAAGAGCTCAAGCAAGATTTTTGGCCAAGTATATTGATGACAAGTTTTTTGGTGCGTGGAGGAAAGCTGTTAGAAGTCAAAGAGAAGGGAGAGAGAAGGTTGTGAAGGCTGTGGAGGAAGCATGCAAGGCGTTGGAAGCTGTTGAGAATGAGCTTAAAAGCAACAATAAGTTCTTTGGAGGAGACAACATTGGGTTAGTGGACATTGTAGGCATCTTCATAGGCTATTGGGTTCCTATCATGCAAACAGCTCTTGGGTTTGAGATTCTGAGCAGCCACAGGTTCCCAAAACTAAGTAAATGGAGTGAAGATCTTATGAGCCATAGCGTTGTGCAGGAGATTCTCCCTCCAAAACCTGACCTTTTTGCTTATACTCAAACTCGTCTTCTATCCAAAAATCTGGGTTCTAAGCTGTGA 684 44.15 MREQLQVFGHRLSPFSRRVELALKLKGIKYQYVEEDIPNKSHLLRKYNPLYKKVPVLVHIGNPIAESLVILEYIDEHWKTNPILPQHPLERAQARFLAKYIDDKFFGAWRKAVRSQREGREKVVKAVEEACKALEAVENELKSNNKFFGGDNIGLVDIVGIFIGYWVPIMQTALGFEILSSHRFPKLSKWSEDLMSHSVVQEILPPKPDLFAYTQTRLLSKNLGSKL 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25137244 25139112 - CcPI632755_04g009530.1 Cco04g0953 176178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0953 227 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Cco04g0953 227 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Cco04g0953 227 Pfam Glutathione S-transferase, C-terminal domain 114 196 IPR004046 -
Cco04g0953 227 Coils Coil 120 144 - -
Cco04g0953 227 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Cco04g0953 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 216 IPR010987 -
Cco04g0953 227 Gene3D - 84 222 - -
Cco04g0953 227 Gene3D Glutaredoxin 1 83 - -
Cco04g0953 227 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cco04g0953 227 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 215 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco04g0953 227 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cco04g0953 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cco04g0953 227 CDD GST_N_Tau 5 78 - -
Cco04g0953 227 CDD GST_C_Tau 88 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0951 Cco-Chr4:25126869 Cco04g0953 Cco-Chr4:25137244 1.30E-66 dispersed
Cco04g0953 Cco-Chr4:25137244 Cco05g0297 Cco-Chr5:2362607 3.00E-49 dispersed
Cco04g0952 Cco-Chr4:25131113 Cco04g0953 Cco-Chr4:25137244 7.00E-36 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0953 K00799 - csv:105435246 255.758