Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0953 | ATGAGGGAACAACTGCAGGTGTTTGGTCATAGGTTAAGTCCCTTCAGTCGGCGAGTGGAGTTGGCTCTCAAACTCAAAGGCATAAAATACCAATATGTGGAGGAAGACATACCCAACAAAAGCCATTTGCTTCGGAAATACAATCCACTTTACAAGAAGGTCCCTGTGCTCGTCCATATTGGAAACCCCATTGCTGAGTCTCTTGTCATCCTTGAATACATTGATGAGCATTGGAAAACCAACCCCATCTTGCCCCAGCATCCTCTGGAAAGAGCTCAAGCAAGATTTTTGGCCAAGTATATTGATGACAAGTTTTTTGGTGCGTGGAGGAAAGCTGTTAGAAGTCAAAGAGAAGGGAGAGAGAAGGTTGTGAAGGCTGTGGAGGAAGCATGCAAGGCGTTGGAAGCTGTTGAGAATGAGCTTAAAAGCAACAATAAGTTCTTTGGAGGAGACAACATTGGGTTAGTGGACATTGTAGGCATCTTCATAGGCTATTGGGTTCCTATCATGCAAACAGCTCTTGGGTTTGAGATTCTGAGCAGCCACAGGTTCCCAAAACTAAGTAAATGGAGTGAAGATCTTATGAGCCATAGCGTTGTGCAGGAGATTCTCCCTCCAAAACCTGACCTTTTTGCTTATACTCAAACTCGTCTTCTATCCAAAAATCTGGGTTCTAAGCTGTGA | 684 | 44.15 | MREQLQVFGHRLSPFSRRVELALKLKGIKYQYVEEDIPNKSHLLRKYNPLYKKVPVLVHIGNPIAESLVILEYIDEHWKTNPILPQHPLERAQARFLAKYIDDKFFGAWRKAVRSQREGREKVVKAVEEACKALEAVENELKSNNKFFGGDNIGLVDIVGIFIGYWVPIMQTALGFEILSSHRFPKLSKWSEDLMSHSVVQEILPPKPDLFAYTQTRLLSKNLGSKL | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25137244 | 25139112 | - | CcPI632755_04g009530.1 | Cco04g0953 | 176178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0953 | 227 | SUPERFAMILY | GST C-terminal domain-like | 76 | 216 | IPR036282 | - | |
Cco04g0953 | 227 | SFLD | Glutathione Transferase (cytosolic) | 2 | 217 | IPR040079 | - | |
Cco04g0953 | 227 | Pfam | Glutathione S-transferase, C-terminal domain | 114 | 196 | IPR004046 | - | |
Cco04g0953 | 227 | Coils | Coil | 120 | 144 | - | - | |
Cco04g0953 | 227 | SFLD | Main.3: Omega- and Tau-like | 2 | 217 | IPR045073 | - | |
Cco04g0953 | 227 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 87 | 216 | IPR010987 | - | |
Cco04g0953 | 227 | Gene3D | - | 84 | 222 | - | - | |
Cco04g0953 | 227 | Gene3D | Glutaredoxin | 1 | 83 | - | - | |
Cco04g0953 | 227 | Pfam | Glutathione S-transferase, N-terminal domain | 4 | 76 | IPR004045 | - | |
Cco04g0953 | 227 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 6 | 215 | IPR045073 | GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER) | |
Cco04g0953 | 227 | SUPERFAMILY | Thioredoxin-like | 5 | 106 | IPR036249 | - | |
Cco04g0953 | 227 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 3 | 82 | IPR004045 | - | |
Cco04g0953 | 227 | CDD | GST_N_Tau | 5 | 78 | - | - | |
Cco04g0953 | 227 | CDD | GST_C_Tau | 88 | 217 | IPR045074 | GO:0004364(InterPro)|GO:0006749(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0951 | Cco-Chr4:25126869 | Cco04g0953 | Cco-Chr4:25137244 | 1.30E-66 | dispersed | |
Cco04g0953 | Cco-Chr4:25137244 | Cco05g0297 | Cco-Chr5:2362607 | 3.00E-49 | dispersed | |
Cco04g0952 | Cco-Chr4:25131113 | Cco04g0953 | Cco-Chr4:25137244 | 7.00E-36 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0953 | K00799 | - | csv:105435246 | 255.758 |