Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0963 ATGGCGGAGGGCTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACCAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAACCCCTCTTTTCAACTTTATCATCATCATAATTACCCTCCTACCTCTGCCGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCGCTCCTCTCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTTCCACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCCTAACTCCTCCGACAAGTTGCTGTCGGATTCCGCCCTTCTTGACACCTTGGAAGGTGATATTCCCGCCGCCGCCGTTGATGGACTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTACCAGCAAATGCAAGCAGTGGTTACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCACCAACCGCCGTCTTGCAATCCATATTCTCAAAGATCCATTATTAACAACCACGGTGCCGGATTCGTCGACCACCAACCCGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCGAGAAGTCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGACTATGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACAATAATAATGCCTTAAACAACAACAACGACCATCTTTCATCCACAAACGAATCCTTATTGAAACCCGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAATACCCATTTCTTTCCAACCCACCACCTTCACGCTGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACGTTTCCTTGACGCTCGGCCTCCACCAAAACCATGGTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1386 47.4 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHHNYPPTSAVTAAALHHHLPPLLSDQQPPLSLDLNLQHRYAYHSTFPLQASKFFKPAQQLLHDLFDYAPPNSSDKLLSDSALLDTLEGDIPAAAVDGLETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQHQPPSCNPYSQRSIINNHGAGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEANNNNALNNNNDHLSSTNESLLKPDGHNNNNASSSNHDHHPLDLSNTHFFPTHHLHAAAGATAIGGSGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25281301 25285714 + CcPI632755_04g009630.1 Cco04g0963 176188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0963 461 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g0963 461 SUPERFAMILY Homeodomain-like 270 335 IPR009057 -
Cco04g0963 461 FunFam BEL1-like homeodomain protein 9 271 333 - -
Cco04g0963 461 Gene3D - 271 333 - -
Cco04g0963 461 Pfam Associated with HOX 115 231 IPR006563 -
Cco04g0963 461 MobiDBLite consensus disorder prediction 339 388 - -
Cco04g0963 461 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677(InterPro)
Cco04g0963 461 MobiDBLite consensus disorder prediction 339 393 - -
Cco04g0963 461 CDD homeodomain 268 329 IPR001356 GO:0003677(InterPro)
Cco04g0963 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 368 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco04g0963 461 SMART prehox3 109 232 IPR006563 -
Cco04g0963 461 SMART HOX_1 268 332 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0963 Cco-Chr4:25281301 Cco04g1384 Cco-Chr4:29223308 3.50E-52 dispersed
Cco10g2138 Cco-Chr10:34601680 Cco04g0963 Cco-Chr4:25281301 1.00E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59029 PF07526 POX 3.90E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0963 - - - 0.0