Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0990 ATGGCTGCTTCTTTTTTGTTTATCAAAATTTTCTTACCTCTAATTTTTCTCTCCACCCAAACCCTATCTTCACAGTATACCCAACTGTTCTATCCTGGATTCAATGGATCCATCAACATATCTTTGAAAGAATCTGCCGAAATTGAAAACAATGGAGTTTTGAGGCTAACGAGCAATTCCCAAAACATCATCGGCCAGGCATTTTACGCCTCTCCAATTCAGTTCAAAAACTCCTCCTCCACTGCCGCACGCGGCGGCGGAGCTTTTTCTTTCTCCACCTGTTTTGCCTTCTGCATCATCCCCGAGAACGACGGCGGCCATGGCTTCACTTTTGCCATTGTCCCTTCTGAAGATCTCAGAGCTATTCCTCAGAGGTTTCTTGGACTCTTCAACGAAACGAACTTCTACGGCAAATCCTCAAACCATATCTTCGCTGTCGAATTTGATACTATCTACGATGTTGGGATCAAAGATCTTGATAACGATCATGTGGGGATCGATTTAAACAGCTTGATTTCGAATATCTCTGTTCACGCTGCATATTTTGACGATTTGGGTAAAGTTCATAATCTCTCACTCCAAAGTGGGAAGCCAATTAAAGTTTGGATTGATTATGATTCTGATGAAATCACTCTCCGTGTTACGATTTCCCCACATTCTTCAAAACCCAGAAGTCCAATTCTGTCGTATAGAGTGGATCTTTCGTCAGTTTTGAATGAAGAAATGTACATTGGGTTTACTGCATCAACAGGCTTACTTTCTAGAAGCTCGCAGTACATTCTGGGGTGGAGTTTCGCCGTTAATGGCCGAGCTCAAGATCTTGATCTCTATTCGCTCCCATTACCAAAAAAGAAGAAAACAGGGGAGAAAATCAGTCTTCCTGTTTACGTGTCTATAACAACAGTGAGTATTTTTGTGATCTCTGTTTTCGCTTTAGGTTTTTATCTCGTACGAAAGTACAAGAAATCCGACGAAATCGAGCCGTGGGAGCTTCAAATAGGACCCCATCGATATTCCTACAGAGAACTAAAAAAGGCTACAAGAAATTTCAGCGACAAGGAGGTTCTTGGGTATGGCGGATCTGGGAAAGTATACAGAGGAATCCTTCCGATTTCGAAAACCCAAATCGCCGTTAAGCGAATTTCTCGCGATTCTAAACAGGGTCTCCGGGAATTCGTGACGGAAATCGCCACAATCGGAATGCTCCGTCATCGAAATCTGGTTCAGTTGCTTGGATGGTGTCGGCAGCAGCAAGATCTGCTTCTGGTTTACGAATTTATGGAGAATGGGAGCTTAGATAATTACCTATTCGATGATCCAAGAACAATTCTGAATTGGGAACAGAGATTCGAAGTAATAAAGGGGGTTGCCTCTGCTTTGCTTTATCTTCACGAGGGGTATAAACAGGTGGTGATTCACAGAGACGTGAAGGCCAGCAATGTGTTATTAGACGACGAATTGAACGGAAGATTGGCGGATTTCGGGCTAGCGAAGGTGTACGAACACGGATCAGCTCCGGATACGACTCGGGTCGTTGGAACTTTGGGGTATTTGGCGCCGGAGTTGTCGAGAACAGGGAAATCGACGACGTGCTCAGACGTATATGCGTTCGGGGCTCTGATGTTGGAAGTGGCTTGTGGGCGGCGGCCGGTGGAGGTGAAGGCGTTGCCGGAGGAGATGACGTTGGTGGATTGGGTTTGGGATAAATACAGAGAAGGGCAGCTTTTGGCCGTCGTGGATCCGAAGCTCCGGGGAGTTTATGACGAAGTTGAGGTGGCGATGGTGTTGAAATTGGGGGTTATGTGTTCGAATAATGAGCCAAAGCAACGGCCGAGTATGAGGCAAGTTGTGCGGTGTTTGGACGGAGAAATTGGTGTCGCCGACGAGTGGAAGGCGCCCAGTGGCGGAAGTAATGGAGGGGCAGTGGGGGATTTTCTTGGGTGTTTAACGTCTACGTCGATTAGTGGAGAAAGCTCATGTTAA 1983 45.89 MAASFLFIKIFLPLIFLSTQTLSSQYTQLFYPGFNGSINISLKESAEIENNGVLRLTSNSQNIIGQAFYASPIQFKNSSSTAARGGGAFSFSTCFAFCIIPENDGGHGFTFAIVPSEDLRAIPQRFLGLFNETNFYGKSSNHIFAVEFDTIYDVGIKDLDNDHVGIDLNSLISNISVHAAYFDDLGKVHNLSLQSGKPIKVWIDYDSDEITLRVTISPHSSKPRSPILSYRVDLSSVLNEEMYIGFTASTGLLSRSSQYILGWSFAVNGRAQDLDLYSLPLPKKKKTGEKISLPVYVSITTVSIFVISVFALGFYLVRKYKKSDEIEPWELQIGPHRYSYRELKKATRNFSDKEVLGYGGSGKVYRGILPISKTQIAVKRISRDSKQGLREFVTEIATIGMLRHRNLVQLLGWCRQQQDLLLVYEFMENGSLDNYLFDDPRTILNWEQRFEVIKGVASALLYLHEGYKQVVIHRDVKASNVLLDDELNGRLADFGLAKVYEHGSAPDTTRVVGTLGYLAPELSRTGKSTTCSDVYAFGALMLEVACGRRPVEVKALPEEMTLVDWVWDKYREGQLLAVVDPKLRGVYDEVEVAMVLKLGVMCSNNEPKQRPSMRQVVRCLDGEIGVADEWKAPSGGSNGGAVGDFLGCLTSTSISGESSC 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25499392 25501374 - CcPI632755_04g009900.1 Cco04g0990 176215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0990 660 FunFam L-type lectin-domain containing receptor kinase S.4 427 632 - -
Cco04g0990 660 PANTHER - 34 624 IPR050528 GO:0005886(PANTHER)
Cco04g0990 660 Pfam Legume lectin domain 28 275 IPR001220 GO:0030246(InterPro)
Cco04g0990 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0990 660 Gene3D Phosphorylase Kinase; domain 1 335 426 - -
Cco04g0990 660 FunFam L-type lectin-domain containing receptor kinase V.9 26 270 - -
Cco04g0990 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 282 IPR013320 -
Cco04g0990 660 FunFam serine/threonine-protein kinase PBS1-like 317 426 - -
Cco04g0990 660 Gene3D - 27 276 - -
Cco04g0990 660 Gene3D Transferase(Phosphotransferase) domain 1 427 631 - -
Cco04g0990 660 CDD STKc_IRAK 356 622 - -
Cco04g0990 660 Pfam Protein tyrosine and serine/threonine kinase 353 620 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0990 660 SMART serkin_6 350 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0990 660 CDD lectin_legume_LecRK_Arcelin_ConA 27 269 IPR001220 GO:0030246(InterPro)
Cco04g0990 660 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Cco04g0990 660 ProSiteProfiles Protein kinase domain profile. 350 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0990 660 SUPERFAMILY Protein kinase-like (PK-like) 332 618 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0990 Cco-Chr4:25499392 Cco10g2223 Cco-Chr10:35239310 2.90E-145 dispersed
Cco04g0990 Cco-Chr4:25499392 Cco04g0992 Cco-Chr4:25519287 3.20E-168 proximal
Cco10g2120 Cco-Chr10:34452961 Cco04g0990 Cco-Chr4:25499392 1.40E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86740 PF07714 PK_Tyr_Ser-Thr 1.60E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0990 - - - 0.0