Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0992 ATGGCGGCGATCTTCTTCCTCATCTTAATTCTTTTGATTTTCATTTCTCTAGCTTCTGGAGATCAAAGCTTCATCTTCAATGGCTTCAGCTCCGGCGATCTCATCCTCGACGGCGTCGCCGAAGTAACCTCCAATGGCCTTTTGAAGCTCACCAACACGTACGACCAACAAATTGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAATCCCCATCAAACAATTCCTCAATTTCCTCCTTCTCTGCAACTTTCGTCTTCGCCATAAACTCAGAGTACGACGATCTTGGAGGTCATGGAATCGCCTTCGTCGTTTCTCCGACGAGGGGTCTCCCCGGAGCTCGGCCGAGCGAAAACCTCGGTCTATTCAACGAATCCAACAACGGGAACGAAGCGAATCACATCTTCGCCGTTGAAATCGACACGATTCAGAATCTTGATCTTAAAGACATCAACAAGAATCATGTCGGAATCAACATTAACGGACTGGTATCGGAGCGGGCGGAGCGAGCAGGGTATTGGGTCGACGGAAAATTCAGGAATTTGACGTTAATCAGTGGTGAACCGATGCAACTTTGGGTTGAATACGACGGTTTTGAAAAGCAAATCAACGTTACTCTGTCTCCAATTGAAATCAGAGATAAACCCAAAATTCCCCTTTTATCTTACCGGCGAGACTTATCGTCGGTCATCAATGACATCATGTACATAGGATTCTCTTCATCGACAGGCTCCATTACGACGTTGCATTACGTTTTAGGTTGGAGTTTCAGCGTCAATGGCGAAGCGCAGAGGCTTAATCTGTCTCAACTCCCCAAGCTTCCATCTCGGCCGGGAAAAAAACAGAGACGATCTAAATTCTTGACAGTGGGTTTACCGTTGATTTCTGTTTCATTAGCTTCAATGACAGTTCTGGGGGTAATTTATTTCATTCACCGGAGACGGAAATTCGCAGAGATTTTAGAGGATTGGGAGCTGGAATACGGACCCCAGAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTTAGAGAAAAGGAATTTCTGGGATTTGGTGGATTCGGAAGAGTTTACAAAGGGGTTTTACCAAATTCAAAAATCGAAGTAGCAGTGAAGAAAATCTCTCACGAATCGAGACAGGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGCGGCTCCGGCACCGGAACTTGGTGGCGCTGTTGGGGTATTGTCGGCGGAAAGGGGAGCTGTTTTTGGTGTACGATTACATGAGGAATGGAAGCTTGGATTCGTATTTACATGAGTTGCCGGAAATTACGATAAATTGGGAACAGAGATTTGAGATAATAAAAGGAGTGGCGTCGGGGCTGTTTTATCTTCATGAACAGTGCGAGAAAGTGGTGATTCATAGAGATGTGAAGGCGAGTAATGTGTTGCTTGATGATGAATTCAATGGCCGATTGGGGGATTTCGGTTTGGCAAAAATGTATGAGCGTGGCGCCGATCCTCGAACCACTCACGTCGTTGGAACTCTTGGGTATTTAGCGCCAGAGCACATAAGAACAGGGAGAGCCACAACAAGAACAGACGTATACGCATTTGGGGCATTTCTTCTAGAAGTGGCCTGTGGAAGAAGGCCAATTCATCCTCAAGAAGACGCCGACGATTTCATATTAATGGATTGGGTTTTCTCTTGTTGGACAAACGGCCAAATTCTCCGAACCGCCGATCCCAAATTGGGAGGTAATTTCGAACCTTCTCAGCTCGAATTGGTTCTCAAACTTGGCTTGCTCTGCTCTCACTACTCCCCCGCCGTTCGCCCCACCATGCACCAGGTTCTGCAGTATTTGCAGGCCGATGCGCCGCTGCCGGACCTCGCCTCGCTCCGGTGGCGCCTCTCCGGAAGTGGGTTTTTCAACTTCAGACCTCGCGACGGCGACGGCGATAGCGATGGGTTGGATGATATTACGATGTCTTATCCGTTATCGACGGGAAGGAATGTGACGAGTTCGTCGTCGGTTGCGGAATCTATTCTGTCGGAAGGCCGCTGA 2046 47.65 MAAIFFLILILLIFISLASGDQSFIFNGFSSGDLILDGVAEVTSNGLLKLTNTYDQQIGHAFYPNSISFKSPSNNSSISSFSATFVFAINSEYDDLGGHGIAFVVSPTRGLPGARPSENLGLFNESNNGNEANHIFAVEIDTIQNLDLKDINKNHVGININGLVSERAERAGYWVDGKFRNLTLISGEPMQLWVEYDGFEKQINVTLSPIEIRDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTLHYVLGWSFSVNGEAQRLNLSQLPKLPSRPGKKQRRSKFLTVGLPLISVSLASMTVLGVIYFIHRRRKFAEILEDWELEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKKISHESRQGMKEFVAEIVSVGRLRHRNLVALLGYCRRKGELFLVYDYMRNGSLDSYLHELPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYERGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHPQEDADDFILMDWVFSCWTNGQILRTADPKLGGNFEPSQLELVLKLGLLCSHYSPAVRPTMHQVLQYLQADAPLPDLASLRWRLSGSGFFNFRPRDGDGDSDGLDDITMSYPLSTGRNVTSSSSVAESILSEGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25519287 25524693 + CcPI632755_04g009920.1 Cco04g0992 176217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0992 681 PANTHER - 24 628 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Cco04g0992 681 MobiDBLite consensus disorder prediction 658 681 - -
Cco04g0992 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
Cco04g0992 681 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246(InterPro)
Cco04g0992 681 MobiDBLite consensus disorder prediction 648 681 - -
Cco04g0992 681 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524(InterPro)
Cco04g0992 681 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Cco04g0992 681 FunFam L-type lectin-domain containing receptor kinase S.4 422 628 - -
Cco04g0992 681 FunFam Lectin-domain containing receptor kinase A4.3 330 421 - -
Cco04g0992 681 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cco04g0992 681 CDD STKc_IRAK 351 616 - -
Cco04g0992 681 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0992 681 Gene3D Transferase(Phosphotransferase) domain 1 422 627 - -
Cco04g0992 681 Gene3D - 21 272 - -
Cco04g0992 681 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246(InterPro)
Cco04g0992 681 SMART serkin_6 345 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0992 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0992 681 FunFam L-type lectin-domain containing receptor kinase V.9 21 264 - -
Cco04g0992 681 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0622 Cco-Chr3:6338011 Cco04g0992 Cco-Chr4:25519287 2.60E-136 dispersed
Cco04g0992 Cco-Chr4:25519287 Cco10g2120 Cco-Chr10:34452961 2.90E-188 dispersed
Cco06g1935 Cco-Chr6:29611262 Cco04g0992 Cco-Chr4:25519287 1.30E-48 dispersed
Cco04g0990 Cco-Chr4:25499392 Cco04g0992 Cco-Chr4:25519287 3.20E-168 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86741 PF00069 Pkinase 1.50E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0992 - - - 0.0