Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1004 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCTTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATAACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATGAGCATGAGCCGTAATTGGGGGCAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACTGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCATGGGAAAGAATTTCCGCGTTTGA 786 53.05 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFMGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25639013 25640503 + CcPI632755_04g010040.1 Cco04g1004 176229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1004 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Cco04g1004 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cco04g1004 261 Gene3D - 167 259 IPR036749 -
Cco04g1004 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cco04g1004 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cco04g1004 261 Gene3D - 23 163 IPR036908 -
Cco04g1004 261 FunFam Expansin 167 259 - -
Cco04g1004 261 SUPERFAMILY PHL pollen allergen 164 255 IPR036749 -
Cco04g1004 261 FunFam Expansin 24 163 - -
Cco04g1004 261 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Cco04g1004 261 CDD DPBB_EXPA_N 34 162 - -
Cco04g1004 261 SMART dpbb_1 70 157 IPR007112 -
Cco04g1004 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1004 Cco-Chr4:25639013 Cco07g0535 Cco-Chr7:6861690 1.20E-105 dispersed
Cco02g2145 Cco-Chr2:34230991 Cco04g1004 Cco-Chr4:25639013 3.30E-137 wgd
Cco03g0148 Cco-Chr3:1469472 Cco04g1004 Cco-Chr4:25639013 1.00E-133 wgd
Cco04g1004 Cco-Chr4:25639013 Cco07g0335 Cco-Chr7:3494809 8.30E-136 wgd
Cco04g1004 Cco-Chr4:25639013 Cco09g2168 Cco-Chr9:36068482 2.00E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1004 - - - 0.0