Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1007 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATTTCCCGCCGTTATGATCCCGCCGACATTATCTCCGACCCACACGACGGGGGTTTCGGTCATTCCTTTTACTACCTCCCACCCGAACCACATACCCTCTCCTCCTCCAAAGATTTCTCCGACGACTACATCTCTCCGGCGACCATTTTCCGGTCGATTTCCGGCGCCTCTGTGAGTGCCAACGTCTCAACGCCGCTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACCACGTTTGATCGGGCCGCAGCTTTCGATTGCTCGAATTCCTTCGCCTCCGTGCCGTTGCAGCCGGTGCCTCGCCAGTCGGTGTCGGGAAATTCCGGCGGATTCCCTTCTTCGGGTCCACTGGAGAGAGGGTTTTTATCTGGACCTTTGGCCGCCAGGACCTTCGAATCGGGTCCGATTGATCGAGTGGTTTATTCCGGTCCGATTGAGAAGGGTGGTGGACCCGAGAAATTGCAAAGGAACGTCTCTCATGGCGGCGTCGGAGACAGAGAACCGAAATCGAAAAGAAGAAGAAGAAGAAGAAGAAGTCTTATTCGGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGGAACCAGAAGGCAGCGACTAAGAGAGTGAGAGAATCGGAATCGTACAAGCATAATGAAAATGCTGCAGCTTCTGCAGCTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGCGAGCTTGGCTCAGGAAGACGACGGCGATTATTTTCTCGGCGGTCAGAGCGTGCAGTGGGCGCAGGGGAAAGCCGGTGAGGATAGAGTTCACGTGGTGATATCGGAGGATAATGGTTGGGTTTTCGTCGGAATTTATGATGGATTCAACGGCCCTGATGCTCCTGATTACTTACTTGCTAATCTCTACACTGCCGTTCTTAAAGAACTCAAGGGTTTGATTTGGAGTGATAAGTTTGATTCGACTGCAACTTCATCTTCCATGAACTCATCCAACTCTGCTTCAATTGAGGAAGACGATCATGGAACAACTCACATGAAAAATCAGGAGAATGATCATCAATCGACAGAGAACTTCTCAGCACAAAATGGGGTTGTGAATTTGGAGGCTGATTCAGTGAGGACAAGAGAGAGAGTTTATAATACGAACTATAGGACGAGTCAGCTGATGACGAAGGCTGATCAGAATCCAAAGAATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTAGAGGGGAAGTTGAACAATAGACAATTAGATCACCACCAAATATGGGATGAATCAACAGCAATCAATCATTCTGAGGTGTTGAATGCTCTGTCTCAAGCTTTGAGAAAAACAGAGGAAGCATATCTGCAGAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTTATGGGTTCTTGTGTTTTGGTTATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGCGCAATTGTAGCACAGCAATTTGAACCGGATTTCGGGACTGGAAAGCCATACAGAGACTTAGAGAGAATCAACGAAGGAGCACTACGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAGATTAAAAGCCTTGGCTTCCCATCAGCTTACGATGGACCACAGCACTTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGATGACGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACGCGGGCGTTCGGAGCTGGCTTTCTGAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAACTTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACAGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACATTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGACCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATATGGAATGGACTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCACGATGACGTTTCGAACATAATGAGATATAAACTTAATACACCCCTTCACTTTCTCCCCACCCCACCACACATTCCAATATTGGAGAAGGCTCCTGAGAAATTTGGAAGTTCTTGTCTTTACTGGAGTGGAGATGATCCAGTTCAAATATTGAATAGGTTTGTGATCCGAAAATTCCAGTCAACATTTAGATGGAAAACTGACGCCAGCTCAAATTGTCAACCAAGTCAGACAGACTCGTCTCCCTTCAACAGGAGCAGAAAGGCAGGGAGAACATCAGATCTTGTATGA 2406 46.63 MGNRIGKIGHCFAGAGDISRRYDPADIISDPHDGGFGHSFYYLPPEPHTLSSSKDFSDDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRQSVSGNSGGFPSSGPLERGFLSGPLAARTFESGPIDRVVYSGPIEKGGGPEKLQRNVSHGGVGDREPKSKRRRRRRRSLIRILKRAISKTISRNQKAATKRVRESESYKHNENAAASAAQTQSSVHLSSHASLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKGLIWSDKFDSTATSSSMNSSNSASIEEDDHGTTHMKNQENDHQSTENFSAQNGVVNLEADSVRTRERVYNTNYRTSQLMTKADQNPKNWKCEWERERLGLEGKLNNRQLDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGALRVFESSNGVEFERLKALASHQLTMDHSTYTEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGTSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYITNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSNIMRYKLNTPLHFLPTPPHIPILEKAPEKFGSSCLYWSGDDPVQILNRFVIRKFQSTFRWKTDASSNCQPSQTDSSPFNRSRKAGRTSDLV 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25693211 25698674 + CcPI632755_04g010070.1 Cco04g1007 176232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1007 801 MobiDBLite consensus disorder prediction 160 196 - -
Cco04g1007 801 CDD PP2Cc 435 712 IPR001932 -
Cco04g1007 801 MobiDBLite consensus disorder prediction 331 346 - -
Cco04g1007 801 MobiDBLite consensus disorder prediction 773 793 - -
Cco04g1007 801 MobiDBLite consensus disorder prediction 210 249 - -
Cco04g1007 801 ProSiteProfiles PPM-type phosphatase domain profile. 261 716 IPR001932 -
Cco04g1007 801 MobiDBLite consensus disorder prediction 773 801 - -
Cco04g1007 801 SUPERFAMILY PP2C-like 272 710 IPR036457 -
Cco04g1007 801 MobiDBLite consensus disorder prediction 347 361 - -
Cco04g1007 801 Pfam Protein phosphatase 2C 426 687 IPR001932 -
Cco04g1007 801 SMART PP2C_4 250 714 IPR001932 -
Cco04g1007 801 MobiDBLite consensus disorder prediction 230 249 - -
Cco04g1007 801 PANTHER PROTEIN PHOSPHATASE 2C 240 710 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco04g1007 801 FunFam Protein phosphatase 2C 29 417 719 - -
Cco04g1007 801 MobiDBLite consensus disorder prediction 331 375 - -
Cco04g1007 801 Gene3D - 229 716 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1007 Cco-Chr4:25693211 Cco10g0188 Cco-Chr10:1823425 2.30E-120 dispersed
Cco05g0717 Cco-Chr5:5911379 Cco04g1007 Cco-Chr4:25693211 8.50E-63 transposed
Cco02g2155 Cco-Chr2:34306865 Cco04g1007 Cco-Chr4:25693211 1.50E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1007 - - - 0.0