Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1008 ATGGCGACCTCTGGCTTTCGAGCTCTTCTATGGTGGAGCAACAGATGGTCCAAGAAAGACTGGGCGATTGCAGCTATCTGTTTCGCTTTCATTGTTTTCGTTTTCTCCTTCCTCTCTGATTCTTGGCATGCTGAAGACAGTGGCATCAACCATAGTTTCGATCTCAATCCCGCCAATGACCTCGATTTGGTTGACCTATCTTTGCTTCAGAATGCCAAAGCAAAAGGCGCTCTATGTCTTGATGGGAGTTTGCCTGGATACCATTTTCAGAAAGGCTTTGGATCTGGTTCTACCAGCTGGGTTCTTCATATTGAGGGTGGAGGTTGGTGCGATACAGTCTCGTCTTGTTCTTCGCGGAAAATGACCCCGTTAGGTTCATCAGACTACATGGAGCGTCGTGTTCGTTTCTCTGGAATTTTAAGTAGTGATGCATCCAAAAATCCTGATTTCTATAATTGGAACAAAATCAAGATACGTTACTGTGATGGAGCATCGTTTGCAAGCCATCCTGAAGGTGAAACAAAGAATGGAGATGTACTTTATTTCAGAGGCCAGCTCATCTGGGAAGCACTTATGGATGAACTCTTATCTGTTGGCTTGTCAAAGGCTAGGCAGGCTCTTCTTTCAGGGTGCTCTGCTGGGGGCTTGGCTACTCTTATACATTGTGACGACTTCAGAGAGCTTTTACCGAAGGATGCAACTGTCAAGTGTCTGGCTGATGGTGGATTTTTCCTTGACGAGGAAGATGTTTGGGGAAATCGTACAATGAGATCTTTCTATCGTGATGTTTTCAACCTTCAGAGAACTGGTAAAAGCTTACCCAAGGATTGTACAGCTACAGACGAGCCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACATATACACACCCCGCTGTTTCTTGTCAACCCAGCTTATGATTTTTGGCAGATACAACATGTCTTGGTGCCAAACACATTAGATCCTGCTGGCTCTTGGCAAAAATGTAGGCTTAATATTCATAAATGTGACCATGCTCAGCTTGAAATTCTTCAAGGGTTCCGGGACTCTTTGGTGAAGGCGCTGAGTGACTTCAAGCACAAGAAGGAAGGAGGACTTTTTGTAAATGCTTGCTTCATCCATTGCCAAACATGGATGTCTGAGACATGGCATTCCCCCAATTCTCCAAGGATAAATAAGAGGACTATAGCAGAGGCAGTGGGCGATTGGTACTTCAAACGAAATTCAGTGAAGCTAATTGACTGCCCTTTTCCATGCAATCCTACCTGCATTCATATGGATTTTAGCCAAGCCGTTGATGTTATTAGATTCTTACGTGCTCCGAGTCAGCCATAA 1338 44.25 MATSGFRALLWWSNRWSKKDWAIAAICFAFIVFVFSFLSDSWHAEDSGINHSFDLNPANDLDLVDLSLLQNAKAKGALCLDGSLPGYHFQKGFGSGSTSWVLHIEGGGWCDTVSSCSSRKMTPLGSSDYMERRVRFSGILSSDASKNPDFYNWNKIKIRYCDGASFASHPEGETKNGDVLYFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADGGFFLDEEDVWGNRTMRSFYRDVFNLQRTGKSLPKDCTATDEPSKCLFPQEIIKHIHTPLFLVNPAYDFWQIQHVLVPNTLDPAGSWQKCRLNIHKCDHAQLEILQGFRDSLVKALSDFKHKKEGGLFVNACFIHCQTWMSETWHSPNSPRINKRTIAEAVGDWYFKRNSVKLIDCPFPCNPTCIHMDFSQAVDVIRFLRAPSQP 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25698911 25706909 - CcPI632755_04g010080.1 Cco04g1008 176233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1008 445 Pfam Pectinacetylesterase 62 410 IPR004963 GO:0016787(InterPro)
Cco04g1008 445 PANTHER NOTUM-RELATED 40 426 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1862 Cco-Chr3:33324696 Cco04g1008 Cco-Chr4:25698911 1.00E-123 dispersed
Cco04g1008 Cco-Chr4:25698911 Cco05g0978 Cco-Chr5:8536849 1.40E-114 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1008 K19882 - csv:101206380 814.683