Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1010 ATGGCTGAGAACGAGGATATCCAACCTCTCGTCTGTGATAATGGAACAGGAATGGTCAAGGCTGGGTTTGCAGGAGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTTGGAATGGGACAAAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAACGAACTTCGTGTCGCTCCGGAAGAGCATCCAGTTCTTCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCCCCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGACGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA 1134 47.88 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25717641 25719415 - CcPI632755_04g010100.1 Cco04g1010 176235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1010 377 FunFam Major actin 260 340 - -
Cco04g1010 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cco04g1010 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cco04g1010 377 PRINTS Actin signature 51 62 IPR004000 -
Cco04g1010 377 PRINTS Actin signature 238 254 IPR004000 -
Cco04g1010 377 PRINTS Actin signature 63 85 IPR004000 -
Cco04g1010 377 PRINTS Actin signature 142 161 IPR004000 -
Cco04g1010 377 PRINTS Actin signature 28 37 IPR004000 -
Cco04g1010 377 PRINTS Actin signature 117 130 IPR004000 -
Cco04g1010 377 FunFam Putative actin-related protein 5 341 369 - -
Cco04g1010 377 Gene3D - 140 340 - -
Cco04g1010 377 Gene3D - 10 371 - -
Cco04g1010 377 FunFam Actin, muscle 182 273 - -
Cco04g1010 377 Pfam Actin 5 377 IPR004000 -
Cco04g1010 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cco04g1010 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cco04g1010 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cco04g1010 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cco04g1010 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cco04g1010 377 SMART actin_3 7 377 IPR004000 -
Cco04g1010 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cco04g1010 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0067 Cco-Chr2:714053 Cco04g1010 Cco-Chr4:25717641 6.80E-205 dispersed
Cco04g1010 Cco-Chr4:25717641 Cco04g1320 Cco-Chr4:28536646 2.20E-214 dispersed
Cco10g1738 Cco-Chr10:30921785 Cco04g1010 Cco-Chr4:25717641 1.10E-217 transposed
Cco02g2157 Cco-Chr2:34320060 Cco04g1010 Cco-Chr4:25717641 6.20E-217 wgd
Cco04g1010 Cco-Chr4:25717641 Cco07g0325 Cco-Chr7:3326068 2.40E-216 wgd
Cco04g1010 Cco-Chr4:25717641 Cco09g2177 Cco-Chr9:36136332 4.50E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1010 K10355 - csv:101214246 749.584