Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1020 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCAAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAAACTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGTATCGAGGCATCGCCGAGCTATAGCATCATCAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.23 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQTHQTQQSPLLVNSARLLGNGGIEASPSYSIIRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25795764 25797274 - CcPI632755_04g010200.1 Cco04g1020 176245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1020 270 MobiDBLite consensus disorder prediction 22 45 - -
Cco04g1020 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g1020 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 214 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1020 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g1020 270 MobiDBLite consensus disorder prediction 22 38 - -
Cco04g1020 270 MobiDBLite consensus disorder prediction 110 139 - -
Cco04g1020 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g1020 270 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1020 Cco-Chr4:25795764 Cco07g0327 Cco-Chr7:3355164 2.00E-39 dispersed
Cco10g2091 Cco-Chr10:34267190 Cco04g1020 Cco-Chr4:25795764 3.60E-38 wgd
Cco02g2164 Cco-Chr2:34377155 Cco04g1020 Cco-Chr4:25795764 7.30E-36 wgd
Cco03g0165 Cco-Chr3:1615655 Cco04g1020 Cco-Chr4:25795764 7.60E-36 wgd
Cco04g1020 Cco-Chr4:25795764 Cco09g2189 Cco-Chr9:36236490 5.20E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59032 PF02701 zf-Dof 3.50E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1020 - - - 0.0