Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1020 | ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCAAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAAACTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTCGGAAATGGTGGTATCGAGGCATCGCCGAGCTATAGCATCATCAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA | 813 | 47.23 | MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQTHQTQQSPLLVNSARLLGNGGIEASPSYSIIRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25795764 | 25797274 | - | CcPI632755_04g010200.1 | Cco04g1020 | 176245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1020 | 270 | MobiDBLite | consensus disorder prediction | 22 | 45 | - | - | |
Cco04g1020 | 270 | ProSitePatterns | Zinc finger Dof-type signature. | 67 | 103 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco04g1020 | 270 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 52 | 214 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1020 | 270 | Pfam | Dof domain, zinc finger | 64 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco04g1020 | 270 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
Cco04g1020 | 270 | MobiDBLite | consensus disorder prediction | 110 | 139 | - | - | |
Cco04g1020 | 270 | ProSiteProfiles | Zinc finger Dof-type profile. | 65 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco04g1020 | 270 | MobiDBLite | consensus disorder prediction | 123 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1020 | Cco-Chr4:25795764 | Cco07g0327 | Cco-Chr7:3355164 | 2.00E-39 | dispersed | |
Cco10g2091 | Cco-Chr10:34267190 | Cco04g1020 | Cco-Chr4:25795764 | 3.60E-38 | wgd | |
Cco02g2164 | Cco-Chr2:34377155 | Cco04g1020 | Cco-Chr4:25795764 | 7.30E-36 | wgd | |
Cco03g0165 | Cco-Chr3:1615655 | Cco04g1020 | Cco-Chr4:25795764 | 7.60E-36 | wgd | |
Cco04g1020 | Cco-Chr4:25795764 | Cco09g2189 | Cco-Chr9:36236490 | 5.20E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59032 | PF02701 | zf-Dof | 3.50E-31 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1020 | - | - | - | 0.0 |