Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1022 ATGGCCGGCAAGGGAGAAGGTCCGGCTATCGGAATCGATCTCGGAACTACCTACTCTTGCGTTGGTGTCTGGCAACACGATCGTGTTGAGATCATCGCCAATGACCAGGGTAACAGGACTACCCCTTCCTATGTTGCCTTCACCGATACTGAGCGTTTGATCGGTGACGCCGCTAAGAACCAGGTTGCCATGAACCCGATTAACACCGTCTTTGACGCAAAGAGGTTGATCGGTAGAAGATTCAGCGACTCTTCAGTCCAAAGTGACATCAAGTTGTGGCCATTCAAGGTCATCCCTGGACCTGGTGACAAGCCCATGATTGTTGTCAACTACAAGGGTGAAGAGAAGCAATTCGCTGCTGAAGAAATCTCTTCCATGGTTCTTATTAAGATGCGTGAAATTGCCGAAGCTTACCTCGGTTCCACAGTGAAGAATGCCGTCGTCACTGTTCCTGCTTACTTTAACGACTCTCAACGTCAAGCCACCAAGGATGCTGGTGTCATTGCTGGTCTCAACGTTATGAGAATTATCAACGAGCCCACCGCTGCTGCCATTGCCTATGGGCTTGACAAGAAAGCAACAAGTGTCGGTGAAAAGAATGTTCTGATTTTCGATCTTGGTGGTGGTACTTTTGACGTCTCTCTTCTCACCATTGAAGAGGGTATCTTCGAGGTGAAGGCCACTGCTGGAGACACTCACCTTGGTGGTGAAGATTTTGACAACAGATTAGTCAACCACTTTGTCCAGGAATTCAAGAGGAAGCACAAGAAGGACATCAGTGGCAACCCAAGAGCTCTTAGAAGGCTGAGAACTTCTTGTGAGAGAGCGAAGAGAACTCTCTCGTCCACTGCTCAAACCACCATTGAGATTGATTCTTTGTACGAAGGAATTGACTTCTACTCAACCATTACTCGTGCCAGATTCGAGGAATTGAACATGGATCTTTTCAGAAAGTGTATGGAACCCGTTGAGAAGTGTTTGAGAGATGCCAAGATGGACAAGAGCACCGTCCATGATGTTGTGCTTGTTGGTGGTTCTACTAGGATTCCCAAGGTCCAACAATTGTTGCAGGACTTCTTCAATGGCAAGGAGCTTTGCAAGAGCATCAACCCCGATGAAGCCGTTGCCTATGGTGCTGCAGTTCAAGCTGCCATCTTGAGCGGTGAGGGAAATGAGAAGGTGCAGGATCTTCTTCTATTGGATGTCACCCCACTTTCTCTTGGTTTGGAAACCGCGGGTGGAGTGATGACTGTTCTGATCCCAAGGAACACCACAATTCCCACAAAGAAGGAGCAAGTCTTCTCTACCTACTCCGACAACCAGCCCGGTGTGTTGATCCAAGTATACGAAGGTGAAAGAACAAGAACCCGCGACAACAACTTGCTTGGGAAATTCGAACTCTCCGGTATCCCTCCAGCTCCCAGGGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCAAACGGTATCTTGAACGTCTCTGCTGAAGACAAGACCACCGGACAAAAGAACAAAATCACCATTACTAATGACAAGGGTAGACTCTCGAAGGAGGAGATTGAGAAGATGGTTCAAGAAGCAGAGAAGTACAAGTCTGAAGATGAGGAGCACAAGAAGAAGGTTGAAGCCAAGAATGCTTTGGAGAACTACGCTTACAACATGAGGAACACAGTGAACGACGAGAAGATTGGTGCTAAGCTTTCCCCGGCCGACAAGAAGAAGATTGATGATGCCATCGAACAGTCGATCCAATGGCTCGATGCTAACCAGCTTGCCGAGGCAGACGAGTTTGAGGACAAGATGAAGGAGTTGGAGAGCATCTGCAACCCAATCATCGCCAAGATGTACCAAGGTGCCGGAGCTGACATGGGCGGTGGTGCTGACGACAGTGCTCCTTCCGGTGGTAGCGGTGCTGGTCCCAAGATTGAGGAAGTCGACTAA 1944 48.56 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIPGPGDKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVNDEKIGAKLSPADKKKIDDAIEQSIQWLDANQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGGGADDSAPSGGSGAGPKIEEVD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25812226 25814844 - CcPI632755_04g010220.1 Cco04g1022 176247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1022 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cco04g1022 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cco04g1022 647 Coils Coil 521 541 - -
Cco04g1022 647 FunFam Heat shock 70 kDa protein 197 260 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 396 415 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 477 493 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 209 219 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 36 48 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 146 166 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 369 389 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 8 21 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 58 66 - -
Cco04g1022 647 PRINTS 70kDa heat shock protein signature 337 353 - -
Cco04g1022 647 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cco04g1022 647 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cco04g1022 647 MobiDBLite consensus disorder prediction 619 647 - -
Cco04g1022 647 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cco04g1022 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cco04g1022 647 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Cco04g1022 647 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Cco04g1022 647 FunFam Heat shock 70 kDa 235 318 - -
Cco04g1022 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cco04g1022 647 Gene3D - 10 384 - -
Cco04g1022 647 FunFam Heat shock 70 kDa 391 545 - -
Cco04g1022 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Cco04g1022 647 Gene3D - 545 619 IPR029048 -
Cco04g1022 647 Gene3D Actin; Chain A, domain 4 235 318 - -
Cco04g1022 647 FunFam Heat shock 70 kDa protein 539 647 - -
Cco04g1022 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cco04g1022 647 FunFam Heat shock protein 70 10 196 - -
Cco04g1022 647 Gene3D - 192 366 - -
Cco04g1022 647 FunFam Heat shock 70 kDa protein 71 126 - -
Cco04g1022 647 Gene3D - 71 126 - -
Cco04g1022 647 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1022 Cco-Chr4:25812226 Cco09g2197 Cco-Chr9:36295047 0.00E+00 dispersed
Cco08g0431 Cco-Chr8:10290092 Cco04g1022 Cco-Chr4:25812226 1.60E-41 transposed
Cco04g1022 Cco-Chr4:25812226 Cco09g2190 Cco-Chr9:36255452 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1022 K03283 - csv:101215599 1223.38