Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1041 ATGAATCCCCAAATTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTAGTGTTCTTGCAGTTTGGTCTTGCAGGAATGGACATTCTGTCTAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGAAAGTCAGACCAAAAATGACAATTCCAGTCTTTGCCAAGTTAATGGTCCTCAGCTTGCTAGAGCCTGTGATTGACCAAAACCTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATTACCTTTGTAATGGCTTGGATCCTCAGGCTTGAGAAGGTAAGAATCAAAAGAATCAGAAGCCAAGCTAAGATAGTAGGAACCATAGCAACAGTTGGAGGAGCCATGATGATGACACTAATAAAAGGCCCAATTTTAGAGCTATTTTGGGTTAAAGAAAGAGCAAACAATCAACAACAAAGAGTTGAAATCAGCCTTCAACATACAATCAAAGGTTCAATTATGATAACAATTGGCTGCTTCAGTTGGGCCTGTTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCTGAGCTTTCCCTTACGGCTTGGATCTGCCTGCTGGGAACTGCGGAGGGCACTGTTTTGGCTTTGGTAATGGAAAGGGGAAACGCCGCCGTTTGGTCCATTACTTGGGGAACTAAATTGCTCGCCGCTGTCTATAGTGGGATATTTTGCTCAGGACTTGCTTATTACATTCAAGGAATAGTAATGAAAGACAAAGGACCTGTATTTGTGACTGCCTTTAGCCCATTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTAGGCGAACGTCTTTACTTTGGAAGGATAGTTGGAGCTGGTGTGATAATTGTGGGACTATACCTTGTTGTTTGGGGCAAAAACAAAGATGGGAATTGTTCCTCAAGTAGTGAAGACTTGAAATTGCCCACACAACAAACAAAAGAAATGGAAGACACCAAGATAGAAAGTTTAACAATTGAAGCAACTAATTCAGTTGATCTAAAGAATAATATTGAGCAAAAATAA 1134 40.92 MNPQISQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKRIRSQAKIVGTIATVGGAMMMTLIKGPILELFWVKERANNQQQRVEISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGIVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRIVGAGVIIVGLYLVVWGKNKDGNCSSSSEDLKLPTQQTKEMEDTKIESLTIEATNSVDLKNNIEQK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25966314 25969526 + CcPI632755_04g010410.1 Cco04g1041 176266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1041 377 PANTHER WAT1-RELATED PROTEIN 17 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco04g1041 377 Pfam EamA-like transporter family 23 153 IPR000620 GO:0016020(InterPro)
Cco04g1041 377 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Cco04g1041 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 331 - -
Cco04g1041 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1041 Cco-Chr4:25966314 Cco07g0318 Cco-Chr7:3229658 3.50E-111 dispersed
Cco06g0712 Cco-Chr6:7971690 Cco04g1041 Cco-Chr4:25966314 3.50E-68 transposed
Cco04g1041 Cco-Chr4:25966314 Cco09g2207 Cco-Chr9:36400063 1.30E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1041 - - - 0.0