Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1051 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTACTAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCAAAATTCCACCTCCACCTCGAAGATGGAGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCTGGCACAATTCACTTGTCTACATATCTGAGTGTGTCATCGTACAAGACTGTAGACGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCGACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG 1134 45.41 MGNAHGHRKHFNHGVNTSPPTTNAPSPFNKYSSSEPTSQNSTSTSKMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26054534 26057800 - CcPI632755_04g010510.1 Cco04g1051 176276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1051 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Cco04g1051 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Cco04g1051 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cco04g1051 377 MobiDBLite consensus disorder prediction 1 49 - -
Cco04g1051 377 SMART amb_all 77 290 IPR002022 -
Cco04g1051 377 Pfam Pectate lyase 121 283 IPR002022 -
Cco04g1051 377 PANTHER PECTATE LYASE 18-RELATED 57 349 IPR045032 GO:0030570(InterPro)
Cco04g1051 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270(InterPro)
Cco04g1051 377 MobiDBLite consensus disorder prediction 14 49 - -
Cco04g1051 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
Cco04g1051 377 Gene3D - 51 358 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1051 Cco-Chr4:26054534 Cco08g0925 Cco-Chr8:21168709 1.50E-40 dispersed
Cco04g1051 Cco-Chr4:26054534 Cco05g2392 Cco-Chr5:32401227 1.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1051 K01728 - csv:101219724 713.761