Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1051 | ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTACTAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCAAAATTCCACCTCCACCTCGAAGATGGAGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCTGGCACAATTCACTTGTCTACATATCTGAGTGTGTCATCGTACAAGACTGTAGACGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCGACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG | 1134 | 45.41 | MGNAHGHRKHFNHGVNTSPPTTNAPSPFNKYSSSEPTSQNSTSTSKMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26054534 | 26057800 | - | CcPI632755_04g010510.1 | Cco04g1051 | 176276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1051 | 377 | PRINTS | Pollen allergen Amb family signature | 120 | 136 | IPR018082 | - | |
Cco04g1051 | 377 | PRINTS | Pollen allergen Amb family signature | 65 | 82 | IPR018082 | - | |
Cco04g1051 | 377 | PRINTS | Pollen allergen Amb family signature | 267 | 286 | IPR018082 | - | |
Cco04g1051 | 377 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cco04g1051 | 377 | SMART | amb_all | 77 | 290 | IPR002022 | - | |
Cco04g1051 | 377 | Pfam | Pectate lyase | 121 | 283 | IPR002022 | - | |
Cco04g1051 | 377 | PANTHER | PECTATE LYASE 18-RELATED | 57 | 349 | IPR045032 | GO:0030570(InterPro) | |
Cco04g1051 | 377 | ProSiteProfiles | Zinc finger integrase-type profile. | 324 | 365 | IPR003308 | GO:0008270(InterPro) | |
Cco04g1051 | 377 | MobiDBLite | consensus disorder prediction | 14 | 49 | - | - | |
Cco04g1051 | 377 | SUPERFAMILY | Pectin lyase-like | 65 | 372 | IPR011050 | - | |
Cco04g1051 | 377 | Gene3D | - | 51 | 358 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1051 | Cco-Chr4:26054534 | Cco08g0925 | Cco-Chr8:21168709 | 1.50E-40 | dispersed | |
Cco04g1051 | Cco-Chr4:26054534 | Cco05g2392 | Cco-Chr5:32401227 | 1.20E-42 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1051 | K01728 | - | csv:101219724 | 713.761 |