Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1069 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTCCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGACTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTATCTGGCATCGGTCTTTTATGCAAGATTATGAACCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAACGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTATTACCTTTGGTAAAGTTGAACTAGGTATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACATTAAGAATAAAGATGTTAGAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCATTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGGAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTATTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATAATGTCAATAATGTCACAACTACAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCAACCGTATGATCACACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATACCAGTGGAAGTGGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGCGAAAACACGAGCAATGCAGGAGATGGCTAA 2370 43.16 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETITFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDIKNKDVRDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVITNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADNVNNVTTTTMQAQSNFVHRESQMQQLCQPYDHTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDTSGSGSGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26178465 26185686 - CcPI632755_04g010690.1 Cco04g1069 176294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1069 789 MobiDBLite consensus disorder prediction 745 760 - -
Cco04g1069 789 Pfam CCT motif 735 777 IPR010402 GO:0005515(InterPro)
Cco04g1069 789 MobiDBLite consensus disorder prediction 670 789 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 213 230 - -
Cco04g1069 789 FunFam Two-component response regulator-like PRR37 89 247 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 772 789 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 459 541 - -
Cco04g1069 789 CDD psREC_PRR 91 194 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 18 34 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 474 541 - -
Cco04g1069 789 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Cco04g1069 789 MobiDBLite consensus disorder prediction 213 295 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 701 737 - -
Cco04g1069 789 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cco04g1069 789 ProSiteProfiles CCT domain profile. 735 777 IPR010402 GO:0005515(InterPro)
Cco04g1069 789 Gene3D - 88 333 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 1 17 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 670 694 - -
Cco04g1069 789 PANTHER TWO-COMPONENT RESPONSE REGULATOR 72 356 IPR045279 GO:0009736(InterPro)
Cco04g1069 789 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Cco04g1069 789 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Cco04g1069 789 MobiDBLite consensus disorder prediction 261 276 - -
Cco04g1069 789 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0009 Cco-Chr1:62979 Cco04g1069 Cco-Chr4:26178465 5.30E-44 dispersed
Cco01g1797 Cco-Chr1:30671175 Cco04g1069 Cco-Chr4:26178465 1.40E-13 dispersed
Cco04g1069 Cco-Chr4:26178465 Cco11g0371 Cco-Chr11:3717960 1.10E-16 dispersed
Cco04g1069 Cco-Chr4:26178465 Cco06g1405 Cco-Chr6:24515754 7.30E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59035 PF00072 Response_reg 1.60E-20 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1069 K12129 - csv:101210765 1363.21