Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1079 ATGTTGGACCTCAATCTCTGTATTCTTTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATGACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGGCTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGAAGATGGGAATCGCATATCTGGGATAGCGGGAAACAAGTCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACTTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTCCAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCCTACGGCGGAGCAACTTCCGTCCCTTTCTTCTTCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGATTCCTCCCCCCCCTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1305 47.43 MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDDGSSSNADCGFTFSFSILNNSNDDQRGRAVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCAPNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFFTAASSGFPSSPAAQIPPPPPPHLLRPAPPFLRYHFPPTNSVPHFYCST 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26261938 26266561 + CcPI632755_04g010790.1 Cco04g1079 176304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1079 434 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 298 - -
Cco04g1079 434 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Cco04g1079 434 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Cco04g1079 434 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
Cco04g1079 434 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Cco04g1079 434 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1079 434 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1079 Cco-Chr4:26261938 Cco04g1452 Cco-Chr4:29944712 3.80E-85 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco04g1079 Cco-Chr4:26261938 3.80E-103 wgd
Cco02g2225 Cco-Chr2:34853474 Cco04g1079 Cco-Chr4:26261938 1.50E-98 wgd
Cco02g1495 Cco-Chr2:27498678 Cco04g1079 Cco-Chr4:26261938 2.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59036 PF00847 AP2 1.40E-10 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1079 K09284 - csv:101211008 686.026