Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1088 ATGTCTCTTGGGAGCTCCAAATTTGTGTTTCTTCTTCTATTATCCTTCCTTCTCCTTTCCAATTTTGGAAAAAGCCAACAACTTATTATGAATTACTACAACCAAACTTGCCCAAAAGCTGAAGATATAATCAAACAAGAAGTTTTTTCTTTATACAAAAAACATGGAAACTCAGCCATTTCATGGATTAGAAATCTCTTCCATGATTGCATGGTCAAGTCATGTGATGCATCTCTTTTATTAGAGATGAAAAAGGAAGAAGGTGTATCAGAAATGAAGTCTTCAAGAAGCTTTGGGATAAGAAATCTCAAATATGTTAATAAAATTAAACAAGTCCTTGAAAATGAATGCCCTAACACTGTTTCTTGTGCTGATATTATGGCTCTTGCTGCAAGAGATGCTATTGTTTTGTTGGGGGGATTAGAGATGGAAATGAAAACAGGAAGAAGAGATAGCAAAGAAAGCTATGGAGAAATAGTGGAAGAAATGATTCCAAATCATAATGACTCTCTTTCATTGGTTCTTTCTCGCTTTCAAGATATTGGCATTGATCCTCAAGCTACTGTTGCTCTTTTAGGAGCTCACTCGGTGGGTCGAGTTCATTGTGTAAACATAGTGAACCGTCTCTTCCCGACCGTGGACCCAACTTTGGATCCGGATCACGCAGAATATTTAAAAGAAAGGTGCCCGAACCCGAACCCGGATCCGAAGGCAGTCCAATACGCGAGAAATGATTTGGAAACTCCGATGGTGTTGGACAACAATTTCTACAAAAACGTATTGGGGCACAAGGCCCTTTTGTTAGTGGACCAGCAATTGGGCTCAAGCCCAATAACTCTTCCTTATGTCCAACAAATGACCTCCAATAACACTTACTTTCTGGCCCAATTTGCGAGGGCTTTGCTCTTGCTGTCTGAGAACAACCCTCTCACTGATGAAGAAGGAGAGATTAGAAAGGATTGTCGACGTGTCAACAATTAA 981 39.65 MSLGSSKFVFLLLLSFLLLSNFGKSQQLIMNYYNQTCPKAEDIIKQEVFSLYKKHGNSAISWIRNLFHDCMVKSCDASLLLEMKKEEGVSEMKSSRSFGIRNLKYVNKIKQVLENECPNTVSCADIMALAARDAIVLLGGLEMEMKTGRRDSKESYGEIVEEMIPNHNDSLSLVLSRFQDIGIDPQATVALLGAHSVGRVHCVNIVNRLFPTVDPTLDPDHAEYLKERCPNPNPDPKAVQYARNDLETPMVLDNNFYKNVLGHKALLLVDQQLGSSPITLPYVQQMTSNNTYFLAQFARALLLLSENNPLTDEEGEIRKDCRRVNN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26329248 26331211 - CcPI632755_04g010880.1 Cco04g1088 176313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1088 326 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 FunFam Peroxidase 165 304 - -
Cco04g1088 326 FunFam Peroxidase 31 173 - -
Cco04g1088 326 ProSiteProfiles Plant heme peroxidase family profile. 27 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PANTHER - 10 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 Pfam Peroxidase 45 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 Gene3D Peroxidase, domain 2 165 304 - -
Cco04g1088 326 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 SUPERFAMILY Heme-dependent peroxidases 27 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1088 326 Gene3D - 31 325 - -
Cco04g1088 326 CDD secretory_peroxidase 27 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0467 Cco-Chr3:4941868 Cco04g1088 Cco-Chr4:26329248 1.20E-102 dispersed
Cco04g1088 Cco-Chr4:26329248 Cco07g0944 Cco-Chr7:21624347 9.30E-52 dispersed
Cco10g2033 Cco-Chr10:33747393 Cco04g1088 Cco-Chr4:26329248 2.50E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1088 K00430 - csv:101221151 568.926